RNA id: AMCG00012260


Basic Information

Item Value
RNA id AMCG00012260
length 1386
RNA type mRNA
GC content 0.59
exon number 9
gene id AMCG00012260
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14100100 ~ 14117969 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCAGAGTGAGCTGAATGCAGGGCCAGCGACAGAGCTGACCATTGTCTGCACCATAACAGCCTGGGAAAAGGACATCTTTGGTGCCCAGCCAATGGGATCATCACTGACTGAGGAAATCAGTCCAGAAGCAGCtgacatcatcatcaacctCCAGATAACAAGGCCAGCGCAGGGCCGGAGCAGTGGCCCACAAGGAGCAGCCGGACATACGAGGTCGGACAGTGAGAAGCTGCAGGAGAGGGATCCTGTGATGACCAGGCGGCCAGACAGTCCGTACAGGGAGTTCAATGCTGCAGAGGAGCTGAAGATCAGCGCAGTGTTCTCTTTGGTAGGACACACAGCCGAAGAGATGGAGGGAGCCCCTGCAGTCCCCCCTCATTACCCCACCGTGTCCGGACCGGCACCAGGGGTGGGGGAGGCATTGGGGGTGCCTATCCAGCCCAGGCTTCTGACGGTGCCTGCCGACCACCAGGCCCCACTGTCCCCCGGCCCCGCTGCCTCGGCACCCCCAGCCAACCGGCTGACGTGCTCTGCCTGTAAGGTGCTGCTGAAGAAAGGCCAGATGGCTTACCAGCACAAGGACTCCATGCAGCTGTTCTGCTCCACACAGTGTCTGACCAGCTACAAGGCTCCCGCCGTGCGCACCGTGCTGAGGAAGACCTGCCACTTCTGCCTCAAGGAGATCGATAAGAATGTGATCTCGGCCCCTGTGGACACTGTGGGGACAGTGAAGGATTTCTGCAGCacgccctgtctgtctgcattcAACTGTGAGCACAAGACCACGGTGTCCACTCAGGCCGTCGAGTGCAGCATGTGCCGCAGGAGAGCAATAATAAGTCATGAGGTGAACTACCAGGGTGTGGTGCACAAGCTGTGCAGCGACTCCTGCTTCTCCTGCTTCCGCTCCGTCAACAACCTCGCCATTGACTGCTGTGAGAACTGCGGGGGCCacagtgggggggggcagtgccACGTGCTGCAGATCGAGGGCACCACAAAGAAGTTCTGCAGTCCCGCCTGCATCACCGCGTACAAGCTGagtgGGAAGGTGATGCCCTGCACAGTGTGTCAGTCGCTGCGCTCCTCTGCCAAGATGTTGGAGAACACCAGTCCCGAGGGCGTCACCGAGCTCTTCTGCTCCATCAGCTGCCAGTCTGCCTACAGATCGCAGACTTGGGCACCCGCAACCACACTGCAGTCTCTGTATCCCGACTGCAGTGCCCGAACCACACACTGCCGCGGAGAAATGGCCGAGACACAACCTCACCAATTCCCACAGGATATTGGTGGCCAGGGCATGAAGCCCTATAAACCCGGGACCTTCTGCACTCGGAAACACAAGAATCTCTCCAGACCTACTCCAGTCCTTCTATTCTAG

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis
ko04218 Cellular senescence

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170057 lncRNA upstream 143795 13927988 ~ 13956305 (+) True G135366
TU170034 lncRNA upstream 151273 13946316 ~ 13948827 (+) True G135356
TU170033 lncRNA upstream 193753 13905475 ~ 13906347 (+) True G135355
TU170037 lncRNA upstream 194809 13904716 ~ 13905291 (+) True G135359
TU170036 lncRNA upstream 195564 13902307 ~ 13904536 (+) True G135358
TU170089 lncRNA downstream 55978 14173947 ~ 14176807 (+) False AMCG00012262
TU170228 lncRNA downstream 109021 14226990 ~ 14232263 (+) True G135506
TU170265 lncRNA downstream 250080 14368049 ~ 14368337 (+) True G135540
TU170270 lncRNA downstream 255071 14373040 ~ 14373945 (+) True G135542
TU170275 lncRNA downstream 259703 14377672 ~ 14378695 (+) True G135544
AMCG00012253 mRNA upstream 30911 14062446 ~ 14069189 (+) False AMCG00012253
AMCG00012251 mRNA upstream 42546 14048952 ~ 14057554 (+) True AMCG00012251
AMCG00012252 mRNA upstream 110934 13984464 ~ 13989166 (+) True AMCG00012252
AMCG00012254 mRNA upstream 117331 13979470 ~ 13982769 (+) True AMCG00012254
AMCG00012255 mRNA upstream 122876 13968531 ~ 13977224 (+) True AMCG00012255
AMCG00012262 mRNA downstream 55944 14173913 ~ 14183167 (+) True AMCG00012262
AMCG00012263 mRNA downstream 68758 14186727 ~ 14199995 (+) True AMCG00012263
AMCG00012268 mRNA downstream 175342 14293311 ~ 14296659 (+) False AMCG00012268
AMCG00012273 mRNA downstream 194318 14312287 ~ 14314436 (+) True AMCG00012273
AMCG00012266 mRNA downstream 219904 14337873 ~ 14372596 (+) True AMCG00012266
TU170041 other upstream 4303 14062237 ~ 14095797 (+) True AMCG00012253
TU170021 other upstream 245181 13850378 ~ 13854919 (+) True AMCG00012247
TU169982 other upstream 286344 13807213 ~ 13813756 (+) False AMCG00012245
TU169904 other upstream 514184 13584270 ~ 13585916 (+) True G135264
TU169873 other upstream 579606 13519421 ~ 13520494 (+) True G135240
TU170232 other downstream 128794 14246763 ~ 14295415 (+) True AMCG00012268
TU170267 other downstream 257664 14375633 ~ 14377651 (+) True G135541
TU170274 other downstream 259703 14377672 ~ 14378695 (+) False G135544
TU170281 other downstream 270106 14388075 ~ 14389685 (+) False AMCG00012267
TU170305 other downstream 316996 14434965 ~ 14435728 (+) True G135566

Expression Profile