RNA id: TU170164


Basic Information

Item Value
RNA id TU170164
length 782
RNA type TUCP
GC content 0.62
exon number 4
gene id AMCG00012261
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14090068 ~ 14094688 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNTGCTGCAGAGGAGCTGAAGATCAGCGCAGTGTTCTCTTTGGTAGGACACACAGCTGAAGAGATGGAGGGAGCCCCTGCAGCTCCCCCACATTACCCCACCGTGTCCGGGTTGGGCTCCGTCTCTGTGTCCGAACCGGCGCCTGGGGTGGGGGAGACATTGGGGGTCACTGTCCAGCCCAGGCTTCTGACGGTGCCTGCCGACCCCCAGGCCCCTCCGCCCTCCTCGCTGCCTCCCAGCCATGCTCCCTCGGCCCCCCCAGCCAGCCGGCTGATGTGCTCCACTTGTAAGGTGCTGCTGCAGAAAGGCCAGATGGCCTACCAGCGCAAGGACTCCACACAGCTGTTCTGCTCCACACAGTGTCTGACCAGCTACAAGGCTCCCGCCGTGCGCACCGTGCTGAGGAAGACCTGCCACTTCTGCCTCAAGGAGATTGGTATCCCCAAGTTTGTGATCTCAGCCCCTGTGGACACTTTGGGGACGGTGAAGGATTTCTGCAGCacgccctgtctgtctgcattcAACTGTGAGCGCAAGACCACGGCGTCCACTCAGGCCGTCAAGTGCAGCATGTGCCGGAGGACAGCCATAATAAGTCATGAGGTGACCCGCCAGGGTGCGCTTTACAAGCTGTGCAGTGACTCCTGCTTCTCCCGCTTCCGCTCCGTCAACAACCTCGCCATGAACTGCTGTGAGAACTGCGGGGGCCACAGCGGGGGGCGGCAGAGCCACGTGCTGCAGATCGAGGGCACCACAAAGAAGTTCTGCAGTCCCGCCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170132 lncRNA downstream 19155 14070491 ~ 14074087 (-) True G135430
TU170145 lncRNA downstream 42377 14049530 ~ 14050865 (-) True G135443
TU170126 lncRNA downstream 103790 13986703 ~ 13989452 (-) True G135424
TU170124 lncRNA downstream 106592 13986079 ~ 13986650 (-) True G135422
TU170123 lncRNA downstream 108649 13983905 ~ 13984593 (-) True G135421
TU170175 lncRNA upstream 18352 14113040 ~ 14114203 (-) True G135467
TU170202 lncRNA upstream 82209 14176897 ~ 14193372 (-) True G135483
TU170197 lncRNA upstream 105573 14200261 ~ 14201886 (-) True G135481
TU170248 lncRNA upstream 203047 14297735 ~ 14302369 (-) False G135525
TU170249 lncRNA upstream 203047 14297735 ~ 14300309 (-) True G135525
AMCG00012258 mRNA downstream 11015 14076148 ~ 14082227 (-) True AMCG00012258
AMCG00012257 mRNA downstream 48128 14044629 ~ 14045114 (-) True AMCG00012257
AMCG00012256 mRNA downstream 97158 13989878 ~ 13996084 (-) True AMCG00012256
AMCG00012250 mRNA downstream 194745 13886738 ~ 13898497 (-) True AMCG00012250
AMCG00012240 mRNA downstream 413921 13673706 ~ 13679321 (-) True AMCG00012240
AMCG00012259 mRNA upstream 71779 14166467 ~ 14170282 (-) True AMCG00012259
AMCG00012265 mRNA upstream 122652 14217340 ~ 14224081 (-) True AMCG00012265
AMCG00012264 mRNA upstream 130023 14224711 ~ 14231369 (-) True AMCG00012264
AMCG00012272 mRNA upstream 186248 14280936 ~ 14293538 (-) True AMCG00012272
AMCG00012271 mRNA upstream 233430 14328118 ~ 14332821 (-) True AMCG00012271
TU169974 other downstream 387630 13704846 ~ 13705612 (-) True G135318
TU169886 other downstream 568561 13522378 ~ 13524681 (-) False AMCG00012233
TU169875 other downstream 571314 13520856 ~ 13521928 (-) False AMCG00012233
TU169801 other downstream 793806 13298444 ~ 13299436 (-) False AMCG00012226
TU169786 other downstream 860898 13231672 ~ 13232344 (-) False AMCG00012222
TU170639 other upstream 425142 14519830 ~ 14523063 (-) True G135814
TU170641 other upstream 436785 14531473 ~ 14534272 (-) True AMCG00012281
TU170666 other upstream 504534 14599222 ~ 14602802 (-) False AMCG00012292
TU170709 other upstream 622784 14717472 ~ 14721170 (-) True G135856
TU170710 other upstream 630822 14725510 ~ 14794158 (-) True G135857

Expression Profile