RNA id: TU170089


Basic Information

Item Value
RNA id TU170089
length 1614
lncRNA type sense_over
GC content 0.49
exon number 2
gene id AMCG00012262
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14173913 ~ 14183167 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTGAAACACTGCcaatcaaaatatacatattttaaaaataataataataataaccataaagCGACTCGTAAAAACAGGCCTATTCACACCGCTGTTGACAAACACGACGTGCGGAGGCGGCCGGGGAGCGCCGGGAGGACCGAAGGCTGCCTacggaaggagagagggagagaaacagagagacagggggaaaacagggaaagagaggaaaaaaaaaagcagggaGATAGACAGGGAGTCCAATCAGCGAATCtgaaaagtattgtttttatagtgTTGTTAccgtcatttttttttattatcaagacgggagggagagagggaaggggggatAGAGAGAGACGGGGcgagtttgtttttatttcaacaatatTGAACcgttttcctctctccctctgtcgtTTTGGGTAAGgaaaaaaaaccacacacaccagACCTCCGCATCAGCGACACGACCAAGGCCCATCTCgctttttccccctctgtctctccctccctctttctctctctctctgtctgtctgcccccccacctcctatCCCCAAACACACACCCCCTCCCGCCTCCCCCGAACGCCCCGGACTCGAGTTTGGGAGCCAGCCGGGTCTGTCAGTGGATTTCGGGGGAAGGTTCCGCGTCAGGACTCGGTCGGACACTGGGGATCCAGTACCGGTTGAATGTGATTGTTGTGTCGCTCTTGCTAAAACCATTATTATCCGGGGTGTGTGGCGTGTGTGTGGAAACGCGTGTTCGCAGAGGAGTACGTTTGTGTAACTCGATACAACACTAACGGCTAATacaactactactgctactactactgcaaATAACACCatattgatgataataatgatcgACTAACCGTAGTAATAATTCCACCGCGGACTGGGGCTCTCATTCGGAATTGGAACGCATAGGCGCAACAACGTTCTTTGGTAGaacactattattataattctgttCTAAATGTGTTTCGTGTCTGTTTTACACTGCTAAGACTGGACTGACGAACTTACACAACAATACTACAtgtaagacattttttttttccggCTACGTACCACGAACATTTCTccgtgtatatttgtatatgttcgTCATCTGTtgactgaattgtatttttcctcGTCGTGGACGTGGAAAAGGATTTGCTTATTGATGTATTGGGGACACGCAATGGAGCTGCCTTGTATTAAGaatttcatttttttcgtTTGGAGACTCACGTTGCCTTAAATAGGAGAGAAAGGACACAAACttttcctctccttccctctcttcgTCCCATACCCACTGTCCCTGGCTCCAAGAGAAGTACAATATAGAAGAAACAGGATATTGTGCCCGATTGAccagcaaattaaaacaaagacgGAAACCCTCAACTTTTTCAGTAAGGGACTTTGGCTGACCAATCAGGGTGCAGCTCTCCCGAAAGCCACAACCAACCCGCTCCCATGACGGGCCGTGGGCTGTGACCCCTCCTGCAGTCTCCAATTGGTCCGTGTCGACCTGGCGAATCCGGCCTAATCCTGAACCCGACACCCCGCCCCCTTCCCCGCCTGGTCCTCCCCAGCCTCCTCCCCCCCGCTCCTCCGGCCATGAACGGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170057 lncRNA upstream 217642 13927988 ~ 13956305 (+) True G135366
TU170034 lncRNA upstream 225120 13946316 ~ 13948827 (+) True G135356
TU170033 lncRNA upstream 267600 13905475 ~ 13906347 (+) True G135355
TU170037 lncRNA upstream 268656 13904716 ~ 13905291 (+) True G135359
TU170036 lncRNA upstream 269411 13902307 ~ 13904536 (+) True G135358
TU170228 lncRNA downstream 50183 14226990 ~ 14232263 (+) True G135506
TU170265 lncRNA downstream 191242 14368049 ~ 14368337 (+) True G135540
TU170270 lncRNA downstream 196233 14373040 ~ 14373945 (+) True G135542
TU170275 lncRNA downstream 200865 14377672 ~ 14378695 (+) True G135544
TU170321 lncRNA downstream 341409 14518216 ~ 14521605 (+) True G135575
AMCG00012260 mRNA upstream 55978 14100100 ~ 14117969 (+) True AMCG00012260
AMCG00012253 mRNA upstream 104758 14062446 ~ 14069189 (+) False AMCG00012253
AMCG00012251 mRNA upstream 116393 14048952 ~ 14057554 (+) True AMCG00012251
AMCG00012252 mRNA upstream 184781 13984464 ~ 13989166 (+) True AMCG00012252
AMCG00012254 mRNA upstream 191178 13979470 ~ 13982769 (+) True AMCG00012254
AMCG00012263 mRNA downstream 9920 14186727 ~ 14199995 (+) True AMCG00012263
AMCG00012268 mRNA downstream 116504 14293311 ~ 14296659 (+) False AMCG00012268
AMCG00012273 mRNA downstream 135480 14312287 ~ 14314436 (+) True AMCG00012273
AMCG00012266 mRNA downstream 161066 14337873 ~ 14372596 (+) True AMCG00012266
AMCG00012267 mRNA downstream 211231 14388038 ~ 14389607 (+) True AMCG00012267
TU170041 other upstream 78150 14062237 ~ 14095797 (+) True AMCG00012253
TU170021 other upstream 319028 13850378 ~ 13854919 (+) True AMCG00012247
TU169982 other upstream 360191 13807213 ~ 13813756 (+) False AMCG00012245
TU169904 other upstream 588031 13584270 ~ 13585916 (+) True G135264
TU169873 other upstream 653453 13519421 ~ 13520494 (+) True G135240
TU170232 other downstream 69956 14246763 ~ 14295415 (+) True AMCG00012268
TU170267 other downstream 198826 14375633 ~ 14377651 (+) True G135541
TU170274 other downstream 200865 14377672 ~ 14378695 (+) False G135544
TU170281 other downstream 211268 14388075 ~ 14389685 (+) False AMCG00012267
TU170305 other downstream 258158 14434965 ~ 14435728 (+) True G135566

Expression Profile