RNA id: TU170281



Basic Information


Item Value
RNA id TU170281
length 1021
RNA type TUCP
GC content 0.47
exon number 3
gene id AMCG00012267
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14388038 ~ 14389685 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aaaaacaaagccagcGTGAGAGAGAAACCGACTTTTTGGCCGCAAACGATAAAACCGTATTTTCCTTTTGCATACGTTTCCGATCGAAACCGCCGCCACATAATTTTGTAAGAAATCGTATTTTAATTCTTGTTCCGATTTCAAAAGTGACCGCTAAGCGTCGTTTTATTGTCCGGtacataaaaccaaaaatgtcCAGTTTCGTAGACGTGAAGAACTTGGAGCCCACCGAGTTTGAGGGCGTTTATTATGACCAATACGACTACTACAACCTGACGGACAAATACTGCGTGAGCTCCAGCAGGAAGGGGCGCTCCAAGCGGGAGGCCAGCTGTAACACCAACAGACCCATCCCCGCCGGGCACGAGCGCAAAATCGTGGAGAAACTGCAGAACAGTCAACGCAGGGCCCGGGAGTGAGCCGCTGAGAGCCACTGACacagTGTCTCCCGGACAGCCCATCCCGGCAATGGACCACAGCAGCCTGAGTGATTGAGCCAGGAAACGACAGAACCACGGACGGGTGGATGGACAGATGGACTGACTGATAAGGGGAGCGGGGGAGTCCAGTCTGCCGAGACTGCACAAGAGACCCCATCCAGACTGAATGAGCAAGACTAGGTgtgggagggagtgagggacTCATCCTGCAGCAGGAATGGAAGAGTGGGAAAGGAGGGGATGAAGAGATGTAAAGTAAGGAAAGGAAGGAGGGAAGGTCTAtattaaatatcagttttaatatttagtttcCAGTTTTAAAATCTATTCTGTATGTAATCTACTTCAGTGGGGTTTACTGATGGTTGTTGCAGGTGCCTTCAGTGTAGGACGGTTTTGTATTTGAGTTGATTGGAAACTGTACTCCCCTCTCACGTGTGTGTAGCTGATGTAACTGAGCTAGTCGGAGGTCTAGACtttagaccttttttttttttttttttaaaatgttctctgaCTTTCAGGGGGATTTTAAACTTCAGTAACAACCTGTaaccatgtattttatttttttaatttct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU170275 lncRNA upstream 9380 14377672 ~ 14378695 (+) True G135544
TU170270 lncRNA upstream 14130 14373040 ~ 14373945 (+) True G135542
TU170265 lncRNA upstream 19738 14368049 ~ 14368337 (+) True G135540
TU170228 lncRNA upstream 155812 14226990 ~ 14232263 (+) True G135506
TU170089 lncRNA upstream 211268 14173947 ~ 14176807 (+) False AMCG00012262
TU170321 lncRNA downstream 128531 14518216 ~ 14521605 (+) True G135575
TU170332 lncRNA downstream 145839 14535524 ~ 14538864 (+) True G135582
TU170347 lncRNA downstream 173891 14563576 ~ 14576998 (+) True G135594
TU170353 lncRNA downstream 180690 14570375 ~ 14610737 (+) True G135595
TU170366 lncRNA downstream 207445 14597130 ~ 14601583 (+) True G135606
AMCG00012266 mRNA upstream 15479 14337873 ~ 14372596 (+) True AMCG00012266
AMCG00012273 mRNA upstream 73639 14312287 ~ 14314436 (+) True AMCG00012273
AMCG00012268 mRNA upstream 91416 14293311 ~ 14296659 (+) False AMCG00012268
AMCG00012263 mRNA upstream 188080 14186727 ~ 14199995 (+) True AMCG00012263
AMCG00012262 mRNA upstream 204908 14173913 ~ 14183167 (+) True AMCG00012262
AMCG00012276 mRNA downstream 9428 14399113 ~ 14410440 (+) True AMCG00012276
AMCG00012274 mRNA downstream 26322 14416007 ~ 14423640 (+) True AMCG00012274
AMCG00012277 mRNA downstream 38274 14427959 ~ 14434886 (+) True AMCG00012277
AMCG00012278 mRNA downstream 49023 14438708 ~ 14443094 (+) True AMCG00012278
AMCG00012275 mRNA downstream 55379 14445064 ~ 14452229 (+) True AMCG00012275
TU170274 other upstream 9380 14377672 ~ 14378695 (+) False G135544
TU170267 other upstream 10424 14375633 ~ 14377651 (+) True G135541
TU170232 other upstream 92660 14246763 ~ 14295415 (+) True AMCG00012268
TU170041 other upstream 292278 14062237 ~ 14095797 (+) True AMCG00012253
TU170021 other upstream 533156 13850378 ~ 13854919 (+) True AMCG00012247
TU170305 other downstream 45280 14434965 ~ 14435728 (+) True G135566
TU170313 other downstream 194439 14584124 ~ 14585770 (+) True G135573
TU170413 other downstream 320559 14710244 ~ 14712641 (+) False AMCG00012294
TU170424 other downstream 598613 14988298 ~ 15009803 (+) True G135649
TU170455 other downstream 730040 15119725 ~ 15623881 (+) True G135670

Expression Profile