RNA id: AMCG00012273



Basic Information


Item Value
RNA id AMCG00012273
length 711
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00012273
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14312287 ~ 14314436 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGggctctctctgtcctctcctccTGCTGCCCTGGGCTTTGCTCTCACTATGCCAGCCTGGCATCATCCTGGGCTGCCACACTGGGTCCAAAGTAGAGTGCCAGAAAGCCAGCTTTGTGCCTGGGTACAACCTGGTGGGCAAAGGGTTTGACATTGTCAGCATGAAGTGGAAGGGTGCCTATGTGATTGATGTTGAGACATGGGCGATGGCAGATGGGATATGTCAGCTGTGCAAGAACACCCAGCTGGGCGGTAATTTGCAGAAGGTGCCCGACTCGGTGCTGGACTGGCGCCCTCGGGTCAACTGTCTCCACAGCGTCACCAGCAAGTTGTACCAGTCCCATGAGTCAGTGCTGAAGGACAGCACGGAGACAACCAATGACAGCTGGAAACTGGGTCTAGATTTGGAGCAAATGGACAACAAACAGGTGGGCGGCACCTACACGGAAATTACCAAGTTTGCCACGGAAAGGTCCAAGTCTGACAAGTACAGCTTCTCCAGCAACGAAGTCAACTGCAAGATttacagTGTGGAGTGTGCACCCAACCTGGGGGGAGACAACTGCCAAAGCTACCTCCCATCACCAATGTCTAAGGAACAGGCTGCCCGCTACATGGGCTGCAACCTGATGCCCACCCTTGAGCCCTTCCTGAGTGCCCTGCAGAACCAGGGGTGGCAGCGCCCAGCCAACTACACCTTCGGCCACTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU170228 lncRNA upstream 80024 14226990 ~ 14232263 (+) True G135506
TU170089 lncRNA upstream 135480 14173947 ~ 14176807 (+) False AMCG00012262
TU170057 lncRNA upstream 355982 13927988 ~ 13956305 (+) True G135366
TU170034 lncRNA upstream 363460 13946316 ~ 13948827 (+) True G135356
TU170033 lncRNA upstream 405940 13905475 ~ 13906347 (+) True G135355
TU170265 lncRNA downstream 53613 14368049 ~ 14368337 (+) True G135540
TU170270 lncRNA downstream 58604 14373040 ~ 14373945 (+) True G135542
TU170275 lncRNA downstream 63236 14377672 ~ 14378695 (+) True G135544
TU170321 lncRNA downstream 203780 14518216 ~ 14521605 (+) True G135575
TU170332 lncRNA downstream 221088 14535524 ~ 14538864 (+) True G135582
AMCG00012268 mRNA upstream 15628 14293311 ~ 14296659 (+) False AMCG00012268
AMCG00012263 mRNA upstream 112292 14186727 ~ 14199995 (+) True AMCG00012263
AMCG00012262 mRNA upstream 129120 14173913 ~ 14183167 (+) True AMCG00012262
AMCG00012260 mRNA upstream 194318 14100100 ~ 14117969 (+) True AMCG00012260
AMCG00012253 mRNA upstream 243098 14062446 ~ 14069189 (+) False AMCG00012253
AMCG00012266 mRNA downstream 23437 14337873 ~ 14372596 (+) True AMCG00012266
AMCG00012267 mRNA downstream 73602 14388038 ~ 14389607 (+) True AMCG00012267
AMCG00012276 mRNA downstream 84677 14399113 ~ 14410440 (+) True AMCG00012276
AMCG00012274 mRNA downstream 101571 14416007 ~ 14423640 (+) True AMCG00012274
AMCG00012277 mRNA downstream 113523 14427959 ~ 14434886 (+) True AMCG00012277
TU170232 other upstream 16872 14246763 ~ 14295415 (+) True AMCG00012268
TU170041 other upstream 216490 14062237 ~ 14095797 (+) True AMCG00012253
TU170021 other upstream 457368 13850378 ~ 13854919 (+) True AMCG00012247
TU169982 other upstream 498531 13807213 ~ 13813756 (+) False AMCG00012245
TU169904 other upstream 726371 13584270 ~ 13585916 (+) True G135264
TU170267 other downstream 61197 14375633 ~ 14377651 (+) True G135541
TU170274 other downstream 63236 14377672 ~ 14378695 (+) False G135544
TU170281 other downstream 73639 14388075 ~ 14389685 (+) False AMCG00012267
TU170305 other downstream 120529 14434965 ~ 14435728 (+) True G135566
TU170313 other downstream 269688 14584124 ~ 14585770 (+) True G135573

Expression Profile