RNA id: AMCG00012274


Basic Information

Item Value
RNA id AMCG00012274
length 1468
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00012274
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14416007 ~ 14423640 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctctctctctctaactctctcAGATGTCAGTGGGTGTGTTCTCTGCCCCCCACAGGCTCTGGTCCATGGTTCGCCCGGTTTTGACAGAATCTGACCAAGACCTGTCAGCAGAGCCCCCCAACACCCACCCGAGCACTGATGGGGACCTGGGCATTAGCACTGTGCTtgaatGTGGATCTGTGGTCATGGCCTGTCAGTTCAACAGTGAGGGAACTCTATTGGCTGTCGGTCTGATCAATGGTACCATCCAGgTGTACAAGGTGGGCGATGCCAGTCCGGTCTACACTCTGAGAGACAGTCTCAGTGTGCAGTCTGCTCTGCCCGTCACTGCCCTGCGCTTCACACACTCCTCCTCACACTGCCTCCTGCTGGCCACCTATGCCAGTGGTGTTGTGCGGAGCTGGTATGTGTCAGGGGGCCAGTGTCTGTGGTTGGTgaaggaggaggggtggggcgAGGACGAAAGTCCGAGGCGGcagaccctctctctctccctcagcccCTCGAGCGAGCGAGTCGTCACGGCAGGGACAGACTGCCGGCTGCACCTGTACGACCTGCAGACCCACCAGAGGGTACAGACCTGCACCGCCAGGGTTTTCGCCGTGACCTTTCACCCCGAGAAAGAGACTGAGTTCATCTCCGGAGGCTGGGACAACACTGTACAGgaaggagagtgctCTAGAGtcCGTCTCTCGGTTGGTCGGGTTGCCATCGGCAGTGTTCAGTTGCTGTGTGTGTCCCGTAGGGGAAAGGGCGGGGCTTATCGCAGCATCATCGGGGAGCAGAGTCTTCCTATTGGAGGGGAAGCCACTCACAGGGATAAGACCAGAGTCCTCATAGAAGAAACTACACCTCCCACAAGGCACCGCAGCTCCAGACACTACAGACCCCGAGAGGCCCTTCAATACATACACCTTGCTATCCAGTGGGACTCCAGCGCAGCtctcacaacacaacacaactttAATTTGAGACTACATTTCCTGTGATTCAATGAAGATTAGTTCCCAAGTAGACCCTCAACTGTGAGTCTACAATTCCCATAATTCCCCAATTGAGAGACTACAGTTCCCATTGTGACCCTTACATTCGAAACTACAATTCTCATAATTCCCTGATTGAGAGACTAGTTTCCATTATGACATCTACATTTGAAACTTCAATTCCTATAATTTGATAACTAACTGCTTTGCACTGGACTGAGCTAGTCTGTACTGATTATATTGCACTGTACTAGATAACACTGTACTGGACTATATAGCACTGGGACTATTCTTCACTGGACTGCCCTGTCGGCCCACTGCACATGTGCACAGGAAGACTGGCATCAGGGCTGTTGTATACACTGCAGAGCTCCTGTAACCATTAACCAGAGCCCTGCACCGCTTACACTGTTGTCCCCTGATCCCAGTCTCTCAGTGATAGCCCTCCCTCAGCCGCCACTGATCTAATAAACAGCCCTG

Function

GO:

id name namespace
GO:0009653 anatomical structure morphogenesis biological_process
GO:0032502 developmental process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170275 lncRNA upstream 37312 14377672 ~ 14378695 (+) True G135544
TU170270 lncRNA upstream 42062 14373040 ~ 14373945 (+) True G135542
TU170265 lncRNA upstream 47670 14368049 ~ 14368337 (+) True G135540
TU170228 lncRNA upstream 183744 14226990 ~ 14232263 (+) True G135506
TU170089 lncRNA upstream 239200 14173947 ~ 14176807 (+) False AMCG00012262
TU170321 lncRNA downstream 94576 14518216 ~ 14521605 (+) True G135575
TU170332 lncRNA downstream 111884 14535524 ~ 14538864 (+) True G135582
TU170347 lncRNA downstream 139936 14563576 ~ 14576998 (+) True G135594
TU170353 lncRNA downstream 146735 14570375 ~ 14610737 (+) True G135595
TU170366 lncRNA downstream 173490 14597130 ~ 14601583 (+) True G135606
AMCG00012276 mRNA upstream 5567 14399113 ~ 14410440 (+) True AMCG00012276
AMCG00012267 mRNA upstream 26400 14388038 ~ 14389607 (+) True AMCG00012267
AMCG00012266 mRNA upstream 43411 14337873 ~ 14372596 (+) True AMCG00012266
AMCG00012273 mRNA upstream 101571 14312287 ~ 14314436 (+) True AMCG00012273
AMCG00012268 mRNA upstream 119348 14293311 ~ 14296659 (+) False AMCG00012268
AMCG00012277 mRNA downstream 4319 14427959 ~ 14434886 (+) True AMCG00012277
AMCG00012278 mRNA downstream 15068 14438708 ~ 14443094 (+) True AMCG00012278
AMCG00012275 mRNA downstream 21424 14445064 ~ 14452229 (+) True AMCG00012275
AMCG00012279 mRNA downstream 143727 14567367 ~ 14570192 (+) True AMCG00012279
AMCG00012284 mRNA downstream 200879 14624519 ~ 14627965 (+) True AMCG00012284
TU170281 other upstream 26322 14388075 ~ 14389685 (+) False AMCG00012267
TU170274 other upstream 37312 14377672 ~ 14378695 (+) False G135544
TU170267 other upstream 38356 14375633 ~ 14377651 (+) True G135541
TU170232 other upstream 120592 14246763 ~ 14295415 (+) True AMCG00012268
TU170041 other upstream 320210 14062237 ~ 14095797 (+) True AMCG00012253
TU170305 other downstream 11325 14434965 ~ 14435728 (+) True G135566
TU170313 other downstream 160484 14584124 ~ 14585770 (+) True G135573
TU170413 other downstream 286604 14710244 ~ 14712641 (+) False AMCG00012294
TU170424 other downstream 564658 14988298 ~ 15009803 (+) True G135649
TU170455 other downstream 696085 15119725 ~ 15623881 (+) True G135670

Expression Profile