RNA id: AMCG00012277


Basic Information

Item Value
RNA id AMCG00012277
length 1491
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00012277
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14427959 ~ 14434886 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagagagggagagagggggactGAGAGGGGCAGTGCGCGAGAGCAGGGAAGGTGTAAGAGAAAGATTAAGAGGGAGGGGTGCAggcagagggaaagagagagggagcagtaGATAGACAGAGGAAGGCTAGAGGCTCAGTTTGTCAGTTCATacatcagtctgtcagtgtgccagtcagaTAGCCGGTGGTGTGACAGATGGCAGAAGAAATGTCATACTCCGCTGCGATAGAGGAGGCCGGCCAAGTTATGTGCAGGTTCCCTCTGAAGCATGTGGATGGGGTGCCACTGATGAACCTAATCGTAGACAGATGGGACGAGATTGCTGCCTTCACCCCTGACCCCTCTGACATGCTTATCGCCACATACCCCAAAGCAGgcACAACCTGGACTCAGGAGATAGTGGACCTGATAATCCATGAGGGCGATGCTGAGGCCTGTCGCCGAGCGCCCACTTTCGTCAGGATGCCTTTCATGGAGATTGTCTCACCCAGGCCCATCCCCTCCGtGGCCTGGGGCTCCTGGTATGACCATGTGAAGGGGTTctgggtggagagggagaggaggaacaTTCTGTACCTCTTCTATGAGGACATGAAGGAGAATCCTCGGCGGGAGGTGGTGCGCATCATGGAGTACATGGGGCGGGCGCTGCCTGATGATGTCATCGACCGCATCGTCGAGCTCACTTCCTTCCAGGTGATGAAGGAGAACCCCATGACCAACTACACCACCCTCCCCAAGAGCGTGCTCGACCAATCCGTCTCTCGGTTCATGAGGAAAggGGAGGTAGGGAACTGGGCCAGTcacttctctccctctcagagtCGGGAGTTTGACGAAGACTACGAGCACCAGATGGGCGGGGCCGGCATTCCCTTCCGCACCCAACTGTGAGGGAGCGCCTGCAATGAGCCCCTCCGCCACCGCCCAGGGACTATCTGGAAACTCAGCAGCCACAATCCACAAAAACATAGAGGATTGAAGGTGGGGTGGGTGGCGGGTTTGGGGCAAGGGATGATAGcatgagggagagggggaatgATGCAGGATGTAGTATGTAGGCCATAATTGTAGCTGCCCACTATAGCACTCAATTTCTGAGCTcaattctaaataaaataatttgactgCAGAAAATCCCACTGGACTGCACCGCACTGGACTAGACCATATTGCATTGGACTAGTTTGGTCTGCACTGGACTGGTGTGCAgagtactgtactatactggaCTGTACTCTACCACACTAAATTATGGGTGCCTCTTAATTGAGAGATTATTTTgggtaaattaagtaaaatagaGCAGATTAAAATGCTGAGGAGTTTACAAAACATCATTCCtctatttaaaagaaaattgtattaatataatcatCTTATGCCACTGGTTGACATTGCTTCTTAAATAATACTTGAATGTAGTCACTTCAGTggtctgctttttgtttttatgaacagACTAATTTACAGTGTACCAACCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170275 lncRNA upstream 49264 14377672 ~ 14378695 (+) True G135544
TU170270 lncRNA upstream 54014 14373040 ~ 14373945 (+) True G135542
TU170265 lncRNA upstream 59622 14368049 ~ 14368337 (+) True G135540
TU170228 lncRNA upstream 195696 14226990 ~ 14232263 (+) True G135506
TU170089 lncRNA upstream 251152 14173947 ~ 14176807 (+) False AMCG00012262
TU170321 lncRNA downstream 83330 14518216 ~ 14521605 (+) True G135575
TU170332 lncRNA downstream 100638 14535524 ~ 14538864 (+) True G135582
TU170347 lncRNA downstream 128690 14563576 ~ 14576998 (+) True G135594
TU170353 lncRNA downstream 135489 14570375 ~ 14610737 (+) True G135595
TU170366 lncRNA downstream 162244 14597130 ~ 14601583 (+) True G135606
AMCG00012274 mRNA upstream 4319 14416007 ~ 14423640 (+) True AMCG00012274
AMCG00012276 mRNA upstream 17519 14399113 ~ 14410440 (+) True AMCG00012276
AMCG00012267 mRNA upstream 38352 14388038 ~ 14389607 (+) True AMCG00012267
AMCG00012266 mRNA upstream 55363 14337873 ~ 14372596 (+) True AMCG00012266
AMCG00012273 mRNA upstream 113523 14312287 ~ 14314436 (+) True AMCG00012273
AMCG00012278 mRNA downstream 3822 14438708 ~ 14443094 (+) True AMCG00012278
AMCG00012275 mRNA downstream 10178 14445064 ~ 14452229 (+) True AMCG00012275
AMCG00012279 mRNA downstream 132481 14567367 ~ 14570192 (+) True AMCG00012279
AMCG00012284 mRNA downstream 189633 14624519 ~ 14627965 (+) True AMCG00012284
AMCG00012285 mRNA downstream 203084 14637970 ~ 14638967 (+) True AMCG00012285
TU170281 other upstream 38274 14388075 ~ 14389685 (+) False AMCG00012267
TU170274 other upstream 49264 14377672 ~ 14378695 (+) False G135544
TU170267 other upstream 50308 14375633 ~ 14377651 (+) True G135541
TU170232 other upstream 132544 14246763 ~ 14295415 (+) True AMCG00012268
TU170041 other upstream 332162 14062237 ~ 14095797 (+) True AMCG00012253
TU170305 other downstream 79 14434965 ~ 14435728 (+) True G135566
TU170313 other downstream 149238 14584124 ~ 14585770 (+) True G135573
TU170413 other downstream 275358 14710244 ~ 14712641 (+) False AMCG00012294
TU170424 other downstream 553412 14988298 ~ 15009803 (+) True G135649
TU170455 other downstream 684839 15119725 ~ 15623881 (+) True G135670

Expression Profile