RNA id: AMCG00012278


Basic Information

Item Value
RNA id AMCG00012278
length 1465
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00012278
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14438708 ~ 14443094 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGAGAAACTGCAGAAGAGGACTAGAGACCTGGGCAAGGGCGTCTGCACAGAAAGAGGGACCCGGACGGGGCAGAGtgacGATGTCTCAGCCAGCGCCTGAAGTAGGTTCCCCTGAGCCAGTGGGTGAGGAGTCAGAGTTCGGGGGTCGTGAGGAGATTGTACTGTGGGAGGGGCTGCCCCTGATGCCCTCGGTGGTACGCTGCTGGGACGGGATCCAAAACTTCGCAGCCAGACCCGATGATATCCTGATAGCCACCTACCCTAAGgctggcactACCTGGGTGGTGGAGATGGTGGATGCAGTGCTGGCGGAGGGGGACATGTCTCGCTGTCTCCGCATCCCCACTTTCAACAGAGCCCCCTTCCTGGAGCTCAACCCCCTGCCACCATTCCCCTCTGGCCTGCAGTTGTTGCAGTCCATGCCATCGCCCAGGCTGGTGAAGACGCACTTTCCTGTCCATTTGGTGCCCCAGTCCTTCTGGGACAATGACTGCAAGGTGGTGTACGTAGCTCGCAATGGGAAGGACAACATGGTGTCCTATTTCCACTTCCAGAGGATGAACCAGAAACTGCCGGAGCCTGGGACCTGGGACGAGTACTTCACAGCCTCACTCAATGGACAGGGACCCTGCCAGAGAGATCACCCGTTTGGCCAAATTCCTGGGGAAGGGGCTGGACCAGGCAGTGATTGACAGGATTGTGGACCACACATCCTTTAGCAGCATGAAGGACAATCCAATGACCAACTACACCGTCCTGCCCTCCTTCGTCTTCAACCATTCGGTGTCTCCCTTCATGCGGAAAGgggaggTAGGTAGCTGGAAGACTCAGTTCACGGTCTCTCAGAACGAGCGCTTCGACGAGGAGTATCGCCGGCGCATGACCGACCCCTCCCTGATCTTCCGCACGGAGCTCTGAGCCCCCCGGACTACGGCTCCCATCAGCCCCTCTGTTCCACCCAGCAGGGGATGACTACGGATCACACCCCTAACTGGACTACAACTTCCAGCGACCCTTTGTGAGGAACTCCCATGATGCAAACTGCAGCATTCCCCAATCCCCCTTGGCACATATATGAAGGACAACGGTTTCTACCATTGAGTACAGTATGGATCTACATCTAAAATGCATCACCTGTCACTGAAGAATCATCTGAAGAACACTACATCTCCCACGATGCACCTCTGCTATGGTTGGAATAAATGATGTAaagggacaaaaataaaagtgctaACTAAGTTTTCAACCCAGACGACACATGTCTTATAATAGTCCTGCGATGTAGGCCTATGTATGTtaggtgtgtgttttgtacattgtctaaaagggaaatatttgtgtattaattgtactgtattaaacaaaacattaacaaaataattacttatttgGTGAAGTATAGCTTTTTATGCTGTCTGATAAACtgtcttggtttgttttaatgtaataaaaacagaactaaT

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170275 lncRNA upstream 60013 14377672 ~ 14378695 (+) True G135544
TU170270 lncRNA upstream 64763 14373040 ~ 14373945 (+) True G135542
TU170265 lncRNA upstream 70371 14368049 ~ 14368337 (+) True G135540
TU170228 lncRNA upstream 206445 14226990 ~ 14232263 (+) True G135506
TU170089 lncRNA upstream 261901 14173947 ~ 14176807 (+) False AMCG00012262
TU170321 lncRNA downstream 75122 14518216 ~ 14521605 (+) True G135575
TU170332 lncRNA downstream 92430 14535524 ~ 14538864 (+) True G135582
TU170347 lncRNA downstream 120482 14563576 ~ 14576998 (+) True G135594
TU170353 lncRNA downstream 127281 14570375 ~ 14610737 (+) True G135595
TU170366 lncRNA downstream 154036 14597130 ~ 14601583 (+) True G135606
AMCG00012277 mRNA upstream 3822 14427959 ~ 14434886 (+) True AMCG00012277
AMCG00012274 mRNA upstream 15068 14416007 ~ 14423640 (+) True AMCG00012274
AMCG00012276 mRNA upstream 28268 14399113 ~ 14410440 (+) True AMCG00012276
AMCG00012267 mRNA upstream 49101 14388038 ~ 14389607 (+) True AMCG00012267
AMCG00012266 mRNA upstream 66112 14337873 ~ 14372596 (+) True AMCG00012266
AMCG00012275 mRNA downstream 1970 14445064 ~ 14452229 (+) True AMCG00012275
AMCG00012279 mRNA downstream 124273 14567367 ~ 14570192 (+) True AMCG00012279
AMCG00012284 mRNA downstream 181425 14624519 ~ 14627965 (+) True AMCG00012284
AMCG00012285 mRNA downstream 194876 14637970 ~ 14638967 (+) True AMCG00012285
AMCG00012293 mRNA downstream 210345 14653439 ~ 14655115 (+) True AMCG00012293
TU170305 other upstream 2980 14434965 ~ 14435728 (+) True G135566
TU170281 other upstream 49023 14388075 ~ 14389685 (+) False AMCG00012267
TU170274 other upstream 60013 14377672 ~ 14378695 (+) False G135544
TU170267 other upstream 61057 14375633 ~ 14377651 (+) True G135541
TU170232 other upstream 143293 14246763 ~ 14295415 (+) True AMCG00012268
TU170313 other downstream 141030 14584124 ~ 14585770 (+) True G135573
TU170413 other downstream 267150 14710244 ~ 14712641 (+) False AMCG00012294
TU170424 other downstream 545204 14988298 ~ 15009803 (+) True G135649
TU170455 other downstream 676631 15119725 ~ 15623881 (+) True G135670
TU170537 other downstream 1008975 15452069 ~ 15479549 (+) True AMCG00012302

Expression Profile