RNA id: AMCG00012279


Basic Information

Item Value
RNA id AMCG00012279
length 900
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00012279
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14567367 ~ 14570192 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCTATTGGAACAGCGCTATTCTACTGCATATCTACCACAGTTATATAAAAGACAGTAAAACTCGCTCTTGTTCATTACGTGACTTTTTCCGCTGTTAACGGAGGCCGAACGGCGTCAGTTTCGCCGCGTTTCGGAACGTCCGAGCGGTTTCCATACccgtgttaaaaacaaacatattttcgCAGTTTATAGCGCCCGGCGTGCAGGTGGTGATTTATTAAGTCGTATTTACTTGTACTAATCAATTGAGGAACAAGAGGAGGTCCCGGAGAAGACTTTCAGCTCCCGAACTATAACGCAGGACatggagagacagggagacccAGGCCAGGGGGACAGCGACAGTGTGCtggaagagcaggagagggaCAGGGTTACAGAGCAGCTGGTGATGGAAATCGGGGAGCTCTCTCTCGCTGCCAGCCGGGCCCTGACTGATGCCCAGggCACATTGCTACAGTGCTCTCAGAGTCTGTTTCGCTGTCAGGAGGCTCAGCTGCAGCTGGAGTCGCTGCTGGACACGCTGCTCATATACCGGAGTGCCACCGCAGGTCAGCACAAACACCCTgaaagaaaagagaaagagagagacagggagacagacatGAACCCTCCTCTAGTAGCAATCATTGGCCCGGGAGTTTCCCAGAGCAACCCGGGCTCAGTCATTGAGGAAGTGACATCATGCCACCCGCAGCTGGAGGCGGTGCGCAGGCAGGAGTCCCGGCTGGGCGGAAACCATTACCTCACCAACCACCGCAGGTCCCCACGGCAATCGGCATCTGGGAGACAGTTGTCCCCACTGCTCACCGGGAGTCAAGTCCAAATCCTACTGGTGTATTTTTTAAGTTCCTGCCAGACatgtggagggagagagggggacagaagAGAGAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170332 lncRNA upstream 28503 14535524 ~ 14538864 (+) True G135582
TU170321 lncRNA upstream 45762 14518216 ~ 14521605 (+) True G135575
TU170275 lncRNA upstream 188672 14377672 ~ 14378695 (+) True G135544
TU170270 lncRNA upstream 193422 14373040 ~ 14373945 (+) True G135542
TU170265 lncRNA upstream 199030 14368049 ~ 14368337 (+) True G135540
TU170353 lncRNA downstream 183 14570375 ~ 14610737 (+) True G135595
TU170366 lncRNA downstream 26938 14597130 ~ 14601583 (+) True G135606
TU170391 lncRNA downstream 93560 14663752 ~ 14707073 (+) True G135625
TU170405 lncRNA downstream 105660 14675852 ~ 14677500 (+) True G135634
TU170303 lncRNA downstream 143588 14713780 ~ 14715881 (+) True AMCG00012294
AMCG00012275 mRNA upstream 115138 14445064 ~ 14452229 (+) True AMCG00012275
AMCG00012278 mRNA upstream 124273 14438708 ~ 14443094 (+) True AMCG00012278
AMCG00012277 mRNA upstream 132481 14427959 ~ 14434886 (+) True AMCG00012277
AMCG00012274 mRNA upstream 143727 14416007 ~ 14423640 (+) True AMCG00012274
AMCG00012276 mRNA upstream 156927 14399113 ~ 14410440 (+) True AMCG00012276
AMCG00012284 mRNA downstream 54327 14624519 ~ 14627965 (+) True AMCG00012284
AMCG00012285 mRNA downstream 67778 14637970 ~ 14638967 (+) True AMCG00012285
AMCG00012293 mRNA downstream 83247 14653439 ~ 14655115 (+) True AMCG00012293
AMCG00012294 mRNA downstream 141984 14712176 ~ 14726783 (+) False AMCG00012294
AMCG00012298 mRNA downstream 344392 14914584 ~ 14915573 (+) True AMCG00012298
TU170305 other upstream 131639 14434965 ~ 14435728 (+) True G135566
TU170281 other upstream 177682 14388075 ~ 14389685 (+) False AMCG00012267
TU170274 other upstream 188672 14377672 ~ 14378695 (+) False G135544
TU170267 other upstream 189716 14375633 ~ 14377651 (+) True G135541
TU170232 other upstream 271952 14246763 ~ 14295415 (+) True AMCG00012268
TU170313 other downstream 13932 14584124 ~ 14585770 (+) True G135573
TU170413 other downstream 140052 14710244 ~ 14712641 (+) False AMCG00012294
TU170424 other downstream 418106 14988298 ~ 15009803 (+) True G135649
TU170455 other downstream 549533 15119725 ~ 15623881 (+) True G135670
TU170537 other downstream 881877 15452069 ~ 15479549 (+) True AMCG00012302

Expression Profile