RNA id: AMCG00012284


Basic Information

Item Value
RNA id AMCG00012284
length 1905
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00012284
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14624519 ~ 14627965 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcagtgATGATGCAGTGGGATCTGGAGTCTCTGGTGTCGGTGGTCCTGTCCCGCGCTCCCTCTCCGGGGCTGGGTGGGCGGCCGCTGACCGGGCTGCTGTGGGCCCTGCTGGTCCTGTTCCTGTGGTACTGCTACCGGGTCGGGGTGGAGAGCGCCGGCCCGGCCCGAGCCCAGTGCTCCCGCCACCGGCGCCGCCGCCCCCCCCGCCTCCAGTCTGCCTCCGGGCCCGTCTCCCTGGGCGACGCGGGGCTGCCCTTCATCGCCATGGAGACGgcgggggaggaggaggaggacgaggaagaggaggaggaggagctgggggGGGCGGGGCGGTGCCGGGGTTACCTGACCCCGGTGCTAGGCCACGCACTATTCCCAGGCCAGGCCCCGCCCCCCAGCCGGCGGCTCTATGGTGCCCTACAGGAGTACGCCAAGAGGTACTCCTGGGCTGGCATGGGCCGCATACACAAGGGGCTGCGGGAGCAGGGTCGTCTCCTCTCAGAGAGGCACTCTATCCAGAGGCCCCAGGTGTTCTTCCTGCCCGACGTTCCCAGCATCCCCTTCTTCCCCCGGGACGCCCAGCGCCATGACATCGAGGTCCTGGAAGCCAGCTATCCCATCATCCTCTCTGAGTTCCAGGCTGTGTACCAGAGGGGCGTGGACCCCAAGCTGGGCTGGACTGTGGGGGGCCCTGGTCAGCCCAAGggttaCTCAGTGTTCTCTCTGTACAggcTGCAGACACCTCCTAACTGTGagctggtggtggggggggagccTCAGTGCTGGTCAGAGGGACACTGCCTCCTAGTGGACGACTCCTTCCTGCACAGCGTCTCCCACAACGGCACTGTGGAGGACGGCCCGCGCGTGGTCTTCACTGTGGACCTCTGGCACCCCAATGTGGCCGCGGCCGAGAGACAAGCCCTGGACTACATCTTCGCCCCTGAGCAatagactgacacactgaaaatactgacacactgatcaTTCTGACATACTGAaaatactgacacactgacatcaCTGAAACACTGCCACACTGATTGACAAACTGATACACTGATATGTGCTGACTAACTGACcgactgtgtctctgtctgtctggctgTATACAGCTGTCAGccgctctgtctgtctgtgtgtctgtgttactgtcagcgtgtctgtctgtccgtctctgtgtctctgtccctctgactTTTCGAAGCCGCCCACTGTTTTTTACCCATGATACCCCGCTTCCTGCCTGGGACACCAATCAGAGGAGCTGAAGCAGAGGGAGCAGCCACAGCGGGGTGCTGCACCACAGAGAGTTGAGTTGAGGCCTTCACCCCACCTCCACCCCGTCTCTTGGGGGCGCTGGTCTTGTACGCCTCACCTAGTTACTGTTGCTAGGTCTGACACGCAAAGGAGAAAGTGCCATAGGGAAACACAGAGATCCCAGTTAGCCCGTGCGTGACATCTGTGTCCTTTCACACTGAGCGCGtgcagattatttattattatgattaatttcGTAGCacacgcccttatccagagcgacttacagtttacataagaAACACTTGAAACACTTTTTGTCTGTCTTAATATTGACCTccatctctgtctttctctctgtctttgtctctgttTAATTACCTCtaacagtctgtctgtctgtctgcctgtctgcttgtttacctttctctctctatctgtcttgtctgtctgtctgtgcctctCTGGCTCTCTTTGATTGTCAACCCCAAACTAGTGTGTTGctctccgtgtgtgtgtgtcaccgTCAGCTtacctgtctgtctgactgCTCTCTTACTATTCCCGCTGTCTTGTGTATCTGTAAAGCAAACGtatcaagaaaaatatatattattattattatcctgaTACTGTTGTGAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170353 lncRNA upstream 13782 14570375 ~ 14610737 (+) True G135595
TU170366 lncRNA upstream 22936 14597130 ~ 14601583 (+) True G135606
TU170347 lncRNA upstream 47521 14563576 ~ 14576998 (+) True G135594
TU170332 lncRNA upstream 85655 14535524 ~ 14538864 (+) True G135582
TU170321 lncRNA upstream 102914 14518216 ~ 14521605 (+) True G135575
TU170391 lncRNA downstream 35787 14663752 ~ 14707073 (+) True G135625
TU170405 lncRNA downstream 47887 14675852 ~ 14677500 (+) True G135634
TU170303 lncRNA downstream 85815 14713780 ~ 14715881 (+) True AMCG00012294
TU170436 lncRNA downstream 176515 14804480 ~ 14804953 (+) True G135656
TU170437 lncRNA downstream 183773 14811738 ~ 14818725 (+) True G135657
AMCG00012279 mRNA upstream 54327 14567367 ~ 14570192 (+) True AMCG00012279
AMCG00012275 mRNA upstream 172290 14445064 ~ 14452229 (+) True AMCG00012275
AMCG00012278 mRNA upstream 181425 14438708 ~ 14443094 (+) True AMCG00012278
AMCG00012277 mRNA upstream 189633 14427959 ~ 14434886 (+) True AMCG00012277
AMCG00012274 mRNA upstream 200879 14416007 ~ 14423640 (+) True AMCG00012274
AMCG00012285 mRNA downstream 10005 14637970 ~ 14638967 (+) True AMCG00012285
AMCG00012293 mRNA downstream 25474 14653439 ~ 14655115 (+) True AMCG00012293
AMCG00012294 mRNA downstream 84211 14712176 ~ 14726783 (+) False AMCG00012294
AMCG00012298 mRNA downstream 286619 14914584 ~ 14915573 (+) True AMCG00012298
AMCG00012300 mRNA downstream 336079 14964044 ~ 15134139 (+) False AMCG00012300
TU170313 other upstream 38749 14584124 ~ 14585770 (+) True G135573
TU170305 other upstream 188791 14434965 ~ 14435728 (+) True G135566
TU170281 other upstream 234834 14388075 ~ 14389685 (+) False AMCG00012267
TU170274 other upstream 245824 14377672 ~ 14378695 (+) False G135544
TU170267 other upstream 246868 14375633 ~ 14377651 (+) True G135541
TU170413 other downstream 82279 14710244 ~ 14712641 (+) False AMCG00012294
TU170424 other downstream 360333 14988298 ~ 15009803 (+) True G135649
TU170455 other downstream 491760 15119725 ~ 15623881 (+) True G135670
TU170537 other downstream 824104 15452069 ~ 15479549 (+) True AMCG00012302
TU170550 other downstream 931939 15559904 ~ 15563836 (+) True G135744

Expression Profile