RNA id: AMCG00012286


Basic Information

Item Value
RNA id AMCG00012286
length 1175
RNA type mRNA
GC content 0.62
exon number 5
gene id AMCG00012286
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14666123 ~ 14668687 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACGATGACGCGCACAAAATGGCGTCGTGTTTACAGCGCCGCTGATCGATACACCTATAGACCAATTGTTTACACTCGTCTGGCTTTCGGCGAGTTTCACAGCACGGCGGTGGCGTCGGGCTTTTTACACAGTACGAACCTAGTCGGATTATAAATACAGGGGACACAACATAAGGCAGATGCAGTCCACGGAGCCCGCAGACTCGTCCCTGAGAGAGGGGATGCAGTCTCTGGGTGTCGGGGAGGAAGAGAGACCAGAGGGAACGAGCCGGGCCGAGGAGGGAGGACAGcgggagaaggaggagcagggagagggggaggaggaaggggaagCTCTGCGAGAAGCGACCGAGAAGACCCTGGAttcagagggagagggggacacGGGAGGAGAGAAAGAGGAGGAGAGCGAGGTgaaggaggaaggggagagagagaaagagggagaggggcagcaggaggaggagtggggggTGCCCTGCAGTGACGAGGAGATCGAGGACCCCGCCTCCTGGATGCCCCCTCCCTTGGAAATCAAACGTCTGTATGAGCTGCTGGACCGGGGAGGGGTCCTGGAGCTGTGCCTGTCCCCGCTGCCCCGCCGCCCCCCCACACCTGACACACAGTCCTCCCCCGACAGAGACAGCGCCGACTccgaggaggagagagagaggagggagagggaggacagggagagagactacaaGGCTCCCAGTCCGACAGAGTTTGACTTTGATGAGGAGACGACCCTCAGCACCCCAAAGAACACCTACATCAACCGCCGCAGAACCCCAGGCTCCTCCGGCCGCTCCCAGCGGCGGGAGGCCCGGCTGGACAAGGTGCTGTCAGACATGCAGCGGCACCGCAAGATCGAGGAGCACATCCTGCGTACGGGCCGGGACCTCTTCAGGGCCGAGCCCTCGGGCCCCACCCCCACGCCCATCCCCCCCGCCGCCCCCTCGGCCCAGAGAGCCGACCCCAAACACATCTTCTCCCCCCGCCAGCGCCGCTACTGAGGGCAGAGAGAGGGCTGCCCGACGCACTGTGTGCAGTACCGGACCGGACCGGACTGAGGGCCGAGCTGTCTGTCTGCCTCCGCTCGCCTCGTTCTGTAAATAATTGTACTTTTATACTGAAATAAACCTTTTCCCCAACAGGAAGGCTTCACTTGGAA

Function

GO: NA

KEGG:

id description
K14973 PA1; PAXIP1-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170678 lncRNA downstream 15796 14608810 ~ 14650327 (-) False AMCG00012291
TU170623 lncRNA downstream 224021 14440765 ~ 14442102 (-) True G135802
TU170620 lncRNA downstream 230395 14434975 ~ 14435728 (-) True G135799
TU170283 lncRNA downstream 297726 14368035 ~ 14368397 (-) True G135551
TU170248 lncRNA downstream 363754 14297735 ~ 14302369 (-) False G135525
TU170700 lncRNA upstream 4324 14673011 ~ 14691919 (-) True G135851
TU170713 lncRNA upstream 87835 14756522 ~ 14757029 (-) True G135859
TU170718 lncRNA upstream 150168 14818855 ~ 14819936 (-) True G135864
TU170789 lncRNA upstream 835730 15504417 ~ 15507652 (-) True G135913
TU170843 lncRNA upstream 1038247 15706934 ~ 15709225 (-) True G135957
AMCG00012291 mRNA downstream 45676 14609229 ~ 14620447 (-) True AMCG00012291
AMCG00012289 mRNA downstream 59064 14604865 ~ 14607059 (-) True AMCG00012289
AMCG00012292 mRNA downstream 63282 14596158 ~ 14602841 (-) True AMCG00012292
AMCG00012288 mRNA downstream 72380 14585099 ~ 14593743 (-) True AMCG00012288
AMCG00012290 mRNA downstream 82100 14572012 ~ 14584023 (-) True AMCG00012290
AMCG00012287 mRNA upstream 4646 14673333 ~ 14683800 (-) True AMCG00012287
AMCG00012296 mRNA upstream 22727 14691414 ~ 14694151 (-) True AMCG00012296
AMCG00012297 mRNA upstream 29844 14698531 ~ 14700135 (-) True AMCG00012297
AMCG00012295 mRNA upstream 75628 14744315 ~ 14754009 (-) True AMCG00012295
AMCG00012299 mRNA upstream 295338 14964025 ~ 15050603 (-) True AMCG00012299
TU170666 other downstream 63321 14599222 ~ 14602802 (-) False AMCG00012292
TU170641 other downstream 131851 14531473 ~ 14534272 (-) True AMCG00012281
TU170639 other downstream 143060 14519830 ~ 14523063 (-) True G135814
TU170164 other downstream 571435 14093242 ~ 14094688 (-) True AMCG00012261
TU169974 other downstream 960511 13704846 ~ 13705612 (-) True G135318
TU170709 other upstream 48785 14717472 ~ 14721170 (-) True G135856
TU170710 other upstream 56823 14725510 ~ 14794158 (-) True G135857
TU170840 other upstream 1038247 15706934 ~ 15732134 (-) False G135957
TU170896 other upstream 1252917 15921604 ~ 15925153 (-) True G135988
TU170997 other upstream 1551439 16220126 ~ 16227243 (-) True G136070

Expression Profile