RNA id: TU170666


Basic Information

Item Value
RNA id TU170666
length 809
RNA type TUCP
GC content 0.59
exon number 4
gene id AMCG00012292
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14596158 ~ 14602841 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCCCTGGTGTTTGCGTGCTGGCGTGCGCGCCGCCGCGCTTGTCCCGCCAGTGGCTGAAGCGCGGAGGAGACGGCATGTCGGCGGAGACCCGGATCCGGCGCTTCGTGTCCCGGGAGCTGCGGCGGAGTCCGGACCTCAGCAAGCTCACTCAGGCCATAATCCGGGAGCGCTACCTGTGCCACTGTGGCTCTGACTCGCTGAGCAAAGACGAGCGGCAGCTGCTGAAGCGAATCgtggaggaggagctgctgaACATGCAGGGCAGCGACAGCAGCGATGACGACGAGCCGCTCATTAAACTGGTCTCGTCCTCCGCCCGCGCCCCCAAGCGCAAGAGAggggagagcgagggagaggaggagtgcAGGAAGAAGTCTCGACGGGCTCCCTCTGATCCAGATTCCCCGGACTCTGGCATTGAGCGTGCAGGGAGGGGGAAGCAACAGAAGCCAATAGAGGTAGAGAGTGAGCCGGAGAGCGAGGAAGAGAAGGGGAAGAGAGGACAGATGAAGAAGGGAGCAAAAAACAAGGCAATAGAGGTAGAGAGTGAGCCGGAGAGCGAGGAAGAGAAGGGGAAGAGAGGACAGATGAAGAAGGGAGCAAAAAACAAGGCAATAGAGGTAGAGAGTGAGCCGGAGAGCGAGGAAGAGAAGGGGAAGAGAGGACAGATGAAGAAGGGAGCAAAAAACAAGGCAATAGAGGTAGAGAGTGAGCCGGAGAGCGAGGAAGAGAAGGGGAAGAGAGGAGCAAAATACAAGGCAATAGAGGTAGAGAGTGAGTCTGAGAGCGAGGAAGAGCAGGATAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170623 lncRNA downstream 157120 14440765 ~ 14442102 (-) True G135802
TU170620 lncRNA downstream 163494 14434975 ~ 14435728 (-) True G135799
TU170283 lncRNA downstream 230825 14368035 ~ 14368397 (-) True G135551
TU170248 lncRNA downstream 296853 14297735 ~ 14302369 (-) False G135525
TU170678 lncRNA upstream 6008 14608810 ~ 14650327 (-) False AMCG00012291
TU170700 lncRNA upstream 70209 14673011 ~ 14691919 (-) True G135851
TU170713 lncRNA upstream 153720 14756522 ~ 14757029 (-) True G135859
TU170718 lncRNA upstream 216053 14818855 ~ 14819936 (-) True G135864
TU170789 lncRNA upstream 901615 15504417 ~ 15507652 (-) True G135913
AMCG00012288 mRNA downstream 5479 14585099 ~ 14593743 (-) True AMCG00012288
AMCG00012290 mRNA downstream 15199 14572012 ~ 14584023 (-) True AMCG00012290
AMCG00012280 mRNA downstream 35317 14538791 ~ 14563905 (-) True AMCG00012280
AMCG00012281 mRNA downstream 64782 14531455 ~ 14534440 (-) False AMCG00012281
AMCG00012282 mRNA downstream 71800 14523821 ~ 14527422 (-) True AMCG00012282
AMCG00012289 mRNA upstream 2063 14604865 ~ 14607059 (-) True AMCG00012289
AMCG00012291 mRNA upstream 6427 14609229 ~ 14620447 (-) True AMCG00012291
AMCG00012286 mRNA upstream 63321 14666123 ~ 14668687 (-) True AMCG00012286
AMCG00012287 mRNA upstream 70531 14673333 ~ 14683800 (-) True AMCG00012287
AMCG00012296 mRNA upstream 88612 14691414 ~ 14694151 (-) True AMCG00012296
TU170641 other downstream 64950 14531473 ~ 14534272 (-) True AMCG00012281
TU170639 other downstream 76159 14519830 ~ 14523063 (-) True G135814
TU170164 other downstream 504534 14093242 ~ 14094688 (-) True AMCG00012261
TU169974 other downstream 893610 13704846 ~ 13705612 (-) True G135318
TU169886 other downstream 1074541 13522378 ~ 13524681 (-) False AMCG00012233
TU170709 other upstream 114670 14717472 ~ 14721170 (-) True G135856
TU170710 other upstream 122708 14725510 ~ 14794158 (-) True G135857
TU170840 other upstream 1104132 15706934 ~ 15732134 (-) False G135957
TU170896 other upstream 1318802 15921604 ~ 15925153 (-) True G135988
TU170997 other upstream 1617324 16220126 ~ 16227243 (-) True G136070

Expression Profile