RNA id: TU170303


Basic Information

Item Value
RNA id TU170303
length 1559
lncRNA type sense_over
GC content 0.43
exon number 2
gene id AMCG00012294
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14710244 ~ 14726783 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atactacctctctctctctgcctgtgtctgtgttagGACACTGATAGAGAGCTGGGCCGGCTGTGTGAGTTCCTGGGCGTGTCTCTGAGTGAGGAGTCCCGGCAGAGAGTGCTGAGAGCCGTCGGTTTCCAGAGCATGAGGGAAAACAACATGACCAACAGCTCCTCTGTGGACCCCAGAGTGCTGGACCAGAAGATCTCTCCATTCCTGAGGAAAGggatGGTTGCAGACTGGAAGAATCAATTCAGTGTTTCACAGAGTGAGGAGTTTGATGAAGACTACCAGAGGAAGATGAAGGACACCACACTGACCTTCAGGATGGAGATATAGACtttgtgtactgtactgtactgcattataccactatactgtactataaaCTGCATTGTACTACAGctgagataaagagagagagagagagagggtgtctCTGTGCTGTAATGTACTGCATTATAGTAATATACCGTACTAAAGTGCATTCACatagatttaatatttattttgaatatatggTATTATATCAACACTCATGTTTTTACAGCACATTACTGCACTTTCTAAGAAACCCATCACCTGATAAGGAAGCAGCATTTTGCAGCCTAATTCAAATTTTAtatcacagacagacagtagtTCTCCACTTTATATAGCTGTGGGCAACATCAAAAGTCAGCAAAGTATTGTGCTGAAATGAATACTGTCTGGCTGACTGTCAATTTAGGAATTGTTTGCACGATTAGAGAGTTTCCACATCAAAGTCGAGTTTGATAGCTTTGGAGTGAGACATATCGACGGCAGCTTGGTGGCCTTAGTGGGAATTGTTCAGACTTGTCTGCTGGTTTAAGATTGTTTTGAATTTGCCGCCTGGGTGTAGTTGCGTGGGACGGAAATGGCTTTTCACAGTTTGTGAAAATGGCTAAATCCCAATGCTAGTGTCATTCGCTAGTACCACAGGGTGGAATGGTGTCTCAGTGGATATGACACTTGTTTCTGCTCTGTCGGATAGTAGATTGGAGTCCTGGCCAGCCCTCGCTGTGTTGACCAATAGATACTCCATGCTGAACTAGGGCACGGTCATTGCTGCCGAGGGGAGTGGGTGTCAGATGTGTGTCAGATTCACAAAGCACTCTAATAGCTCTAAGAAAACAGTAGCTTATCAGATTTAAAACTAGTGTACAGGAATAaagagggatttttttttacagtcatGTAATAGTTACAGTAACTTAGTGGCCACTCAgctgcagatttattttatattcattatttacagAGTAGTTACACGTCCACTGACAGGTCCCCTGTATGCTCTgtaattttctctttcttgaTTTCATTCTTCCCTTTTTTGCCTGGCTTCCTTCCTCTCTTGTTGTCTTGCCAACTCTCTGTCTCCAGGAGTACTTGCGGAAATTAGAGAAAATGTTAAGAATGCATCCCATGGGGATGGGGGTGGGTAGTGGCTTAACTCGACTAAAACTGTACTTTTTATGGCACTTAGGAATcttagaaagagagagagagattgttctTGCCCTAGATTTCacaatcagtcaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170391 lncRNA upstream 6707 14663752 ~ 14707073 (+) True G135625
TU170405 lncRNA upstream 36280 14675852 ~ 14677500 (+) True G135634
TU170353 lncRNA upstream 103043 14570375 ~ 14610737 (+) True G135595
TU170366 lncRNA upstream 112197 14597130 ~ 14601583 (+) True G135606
TU170347 lncRNA upstream 136782 14563576 ~ 14576998 (+) True G135594
TU170436 lncRNA downstream 88599 14804480 ~ 14804953 (+) True G135656
TU170437 lncRNA downstream 95857 14811738 ~ 14818725 (+) True G135657
TU170469 lncRNA downstream 258490 14974371 ~ 14979342 (+) False AMCG00012300
TU170470 lncRNA downstream 258490 14974371 ~ 14979342 (+) False AMCG00012300
TU170471 lncRNA downstream 258490 14974371 ~ 14979342 (+) False AMCG00012300
AMCG00012293 mRNA upstream 58665 14653439 ~ 14655115 (+) True AMCG00012293
AMCG00012285 mRNA upstream 74813 14637970 ~ 14638967 (+) True AMCG00012285
AMCG00012284 mRNA upstream 85815 14624519 ~ 14627965 (+) True AMCG00012284
AMCG00012279 mRNA upstream 143588 14567367 ~ 14570192 (+) True AMCG00012279
AMCG00012275 mRNA upstream 261551 14445064 ~ 14452229 (+) True AMCG00012275
AMCG00012298 mRNA downstream 198703 14914584 ~ 14915573 (+) True AMCG00012298
AMCG00012300 mRNA downstream 248163 14964044 ~ 15134139 (+) False AMCG00012300
AMCG00012305 mRNA downstream 680471 15396352 ~ 15397381 (+) True AMCG00012305
AMCG00012303 mRNA downstream 683552 15399433 ~ 15400438 (+) True AMCG00012303
AMCG00012306 mRNA downstream 714407 15430288 ~ 15430887 (+) True AMCG00012306
TU170413 other upstream 1139 14710244 ~ 14712641 (+) False AMCG00012294
TU170313 other upstream 128010 14584124 ~ 14585770 (+) True G135573
TU170305 other upstream 278052 14434965 ~ 14435728 (+) True G135566
TU170281 other upstream 324095 14388075 ~ 14389685 (+) False AMCG00012267
TU170274 other upstream 335085 14377672 ~ 14378695 (+) False G135544
TU170424 other downstream 272417 14988298 ~ 15009803 (+) True G135649
TU170455 other downstream 403844 15119725 ~ 15623881 (+) True G135670
TU170537 other downstream 736188 15452069 ~ 15479549 (+) True AMCG00012302
TU170550 other downstream 844023 15559904 ~ 15563836 (+) True G135744
TU170595 other downstream 1195367 15911248 ~ 15930848 (+) True G135781

Expression Profile