RNA id: AMCG00012296


Basic Information

Item Value
RNA id AMCG00012296
length 642
RNA type mRNA
GC content 0.66
exon number 2
gene id AMCG00012296
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14691414 ~ 14694151 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCATGTGCTACTGGCACAAGCTGCAGGTCAAAGGCCACGGCTCGGGCCCCGGCGCGCTCGCGGCCGCCCTGCGGAGCTACCTGCGCCGGGAGTTCCTCATGGTGCTGCACCACGTCGTCATGGTGACCGTCTGCTTCCCCGTCTCCGTGtACAAGCAGCAGCACACTCTCCTGCACAAGGTGAACGGAGCCCTGATGCTGGTGACTTTCTTCACCTGCCGCATCCTGCTCTTCCCCTACCTGTACTGGGCTTACGGGCGGTACGCCGGGCTGCCCCTGCACCGGGTGCCCCTGGCCGTCCCCTGGCACTGCAACCTTGGGGCCGCCCTCCTCATGGCCCCCCAGGTGTACTGGTTCACCCTCATCTGCCGGGGCGCCTTGCGCTTGTtcctctcccactcccactcccattCCCACGGCCACTCCCATGCCCACCCACACTGCCGCCACTCTCCCTCGcctccccccagccccccagccctCTCCTCACCGGCCaatccttcctcctcctcttcctcttcctcctcctcctcctctcccacctCCCCACACTGTCCGCACAGCGTCTGGGGCAAGGGGTGCGACCACATCAACGCCAACGGATATGGTGCTCTGGACAGAGACGCCCCCTcgcactga

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170678 lncRNA downstream 41087 14608810 ~ 14650327 (-) False AMCG00012291
TU170623 lncRNA downstream 249312 14440765 ~ 14442102 (-) True G135802
TU170620 lncRNA downstream 255686 14434975 ~ 14435728 (-) True G135799
TU170283 lncRNA downstream 323017 14368035 ~ 14368397 (-) True G135551
TU170249 lncRNA downstream 391105 14297735 ~ 14300309 (-) True G135525
TU170713 lncRNA upstream 62371 14756522 ~ 14757029 (-) True G135859
TU170718 lncRNA upstream 124704 14818855 ~ 14819936 (-) True G135864
TU170789 lncRNA upstream 810266 15504417 ~ 15507652 (-) True G135913
TU170843 lncRNA upstream 1012783 15706934 ~ 15709225 (-) True G135957
TU170870 lncRNA upstream 1116645 15810796 ~ 15811753 (-) True G135973
AMCG00012287 mRNA downstream 7614 14673333 ~ 14683800 (-) True AMCG00012287
AMCG00012286 mRNA downstream 22727 14666123 ~ 14668687 (-) True AMCG00012286
AMCG00012291 mRNA downstream 70967 14609229 ~ 14620447 (-) True AMCG00012291
AMCG00012289 mRNA downstream 84355 14604865 ~ 14607059 (-) True AMCG00012289
AMCG00012292 mRNA downstream 88573 14596158 ~ 14602841 (-) True AMCG00012292
AMCG00012297 mRNA upstream 4380 14698531 ~ 14700135 (-) True AMCG00012297
AMCG00012295 mRNA upstream 50164 14744315 ~ 14754009 (-) True AMCG00012295
AMCG00012299 mRNA upstream 269874 14964025 ~ 15050603 (-) True AMCG00012299
AMCG00012301 mRNA upstream 369978 15064129 ~ 15105136 (-) True AMCG00012301
AMCG00012304 mRNA upstream 680198 15374349 ~ 15378863 (-) True AMCG00012304
TU170666 other downstream 88612 14599222 ~ 14602802 (-) False AMCG00012292
TU170641 other downstream 157142 14531473 ~ 14534272 (-) True AMCG00012281
TU170639 other downstream 168351 14519830 ~ 14523063 (-) True G135814
TU170164 other downstream 596726 14093242 ~ 14094688 (-) True AMCG00012261
TU169974 other downstream 985802 13704846 ~ 13705612 (-) True G135318
TU170709 other upstream 23321 14717472 ~ 14721170 (-) True G135856
TU170710 other upstream 31359 14725510 ~ 14794158 (-) True G135857
TU170840 other upstream 1012783 15706934 ~ 15732134 (-) False G135957
TU170896 other upstream 1227453 15921604 ~ 15925153 (-) True G135988
TU170997 other upstream 1525975 16220126 ~ 16227243 (-) True G136070

Expression Profile