RNA id: AMCG00012298



Basic Information


Item Value
RNA id AMCG00012298
length 990
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00012298
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14914584 ~ 14915573 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAACAACTCCAGCACCTCTCCATGTGGCATTGACTTCACTGCTGACCAGATCTTCCTCCCTGTGCTCTACGGCTGTGTCTTCTGCATCGGGTTGCCCACCAACTGCCTGGCGCTCTATGGCCTGTACCGCCTGATCGGGGCCGACTACACCCTGCCCGTCTACGTCATCAACCTCCTGCTGTCCGACCTCCTACATATCGCCACCCTGCCCTTCTGGATTGACTACTACAGCAGGGGGCACGTGTGGCGTTTTGGGAAGGTCGCTTGTGAAATCATAAGCTGCATGTTGTCCATTGGCCTGTTTGTCAGTATCTTCTTCATGTGCTGCACCGCACTGGAGAGATACCTGGTCATCGTCCACCCCTTTTGGTTTCAGAGCCAGCGCAAGATCAGAAACGTCTACCTGCTGAGCCTGGTCATATGGGTCTTCTTCATTTCTTCAGTTACTGTGGGCTTTAGCCTCGGATTTAAGGGTGATGCTACAGGAAGCCTTTGCAGCGAGCACTTCCCTGCCAATACAGAGTTTGCAGCCTATCGGTTGGTTTCCATCCCCATCACCTTCCTCCTACCCCTCCTGTTCCTGCTGTTCGTGTTGTTCCGAGTCCGGCGCAGCCTGGCCCAGTCGCTGTCCATCCCAGAGCAGGAGAAGAGAAGGTTCACAGGGCTGCTAATCCTGATCATGCTCATGTTCCTTCTGATCTTCGGGCCATACCACCTGGCCATAGGCGTCAGATACACTTGGGTGATTGTTGCCACAAACAAGTGCCAGTTTGAATCAAAGATCTTCCTCGGTTTACAGATCTCCTGGGGACTGATCAGTGTGAATGCTCTTCTGGACCCTGTCATGTACATCTTCATCTACAAGAACACCAGGAAGAGAATGCTGGACTGCTGCCTTTGTTTTCAGAGGATAAGCAGGTCCacgaataacaacaacacacttATAGGGGACCTTAATAGCAGGCCACCAGTCCAGACAGTGTCATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU170437 lncRNA upstream 95859 14811738 ~ 14818725 (+) True G135657
TU170436 lncRNA upstream 109631 14804480 ~ 14804953 (+) True G135656
TU170303 lncRNA upstream 198703 14713780 ~ 14715881 (+) True AMCG00012294
TU170391 lncRNA upstream 207511 14663752 ~ 14707073 (+) True G135625
TU170405 lncRNA upstream 237084 14675852 ~ 14677500 (+) True G135634
TU170469 lncRNA downstream 58798 14974371 ~ 14979342 (+) False AMCG00012300
TU170470 lncRNA downstream 58798 14974371 ~ 14979342 (+) False AMCG00012300
TU170471 lncRNA downstream 58798 14974371 ~ 14979342 (+) False AMCG00012300
TU170474 lncRNA downstream 58798 14974371 ~ 14979342 (+) False AMCG00012300
TU170454 lncRNA downstream 134062 15049635 ~ 15245994 (+) True AMCG00012300
AMCG00012294 mRNA upstream 187801 14712176 ~ 14726783 (+) False AMCG00012294
AMCG00012293 mRNA upstream 259469 14653439 ~ 14655115 (+) True AMCG00012293
AMCG00012285 mRNA upstream 275617 14637970 ~ 14638967 (+) True AMCG00012285
AMCG00012284 mRNA upstream 286619 14624519 ~ 14627965 (+) True AMCG00012284
AMCG00012279 mRNA upstream 344392 14567367 ~ 14570192 (+) True AMCG00012279
AMCG00012300 mRNA downstream 48471 14964044 ~ 15134139 (+) False AMCG00012300
AMCG00012305 mRNA downstream 480779 15396352 ~ 15397381 (+) True AMCG00012305
AMCG00012303 mRNA downstream 483860 15399433 ~ 15400438 (+) True AMCG00012303
AMCG00012306 mRNA downstream 514715 15430288 ~ 15430887 (+) True AMCG00012306
AMCG00012302 mRNA downstream 555478 15471051 ~ 15474526 (+) False AMCG00012302
TU170413 other upstream 201943 14710244 ~ 14712641 (+) False AMCG00012294
TU170313 other upstream 328814 14584124 ~ 14585770 (+) True G135573
TU170305 other upstream 478856 14434965 ~ 14435728 (+) True G135566
TU170281 other upstream 524899 14388075 ~ 14389685 (+) False AMCG00012267
TU170274 other upstream 535889 14377672 ~ 14378695 (+) False G135544
TU170424 other downstream 72725 14988298 ~ 15009803 (+) True G135649
TU170455 other downstream 204152 15119725 ~ 15623881 (+) True G135670
TU170537 other downstream 536496 15452069 ~ 15479549 (+) True AMCG00012302
TU170550 other downstream 644331 15559904 ~ 15563836 (+) True G135744
TU170595 other downstream 995675 15911248 ~ 15930848 (+) True G135781

Expression Profile