RNA id: AMCG00012299


Basic Information

Item Value
RNA id AMCG00012299
length 900
RNA type mRNA
GC content 0.53
exon number 7
gene id AMCG00012299
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14964025 ~ 15050603 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggctgacagggagggtcaaagggtaactcagagggtgctgggaaggagagagaaggtCCGGTTCAAATGTGGGGGTAACcggaaggtgagTGATCTGCGCATCATCTGTGATGCTGCTTATCCGCTCTCACAATTCCTCATGACGCCATTCTGTGGCCATTTAACAGTATGGATGATGATCGAAAGAGCTTTTGGCCTGCTCAAGATGAAGATTGTGCATCTCAGTTTAGCTGTTAAAGCATGCTGCAATCTACACAATATCTGTctggagagagagtgtgaacTACAAATAGAGCAGGCTTTAGTTGACAATGTAGCCAATTATGTCAACCAACCACACAAGCCACCAAATGATATCCGTGGAAGTATTCTGTACTTTGGCCTGATCTGCACCTTCGGAAACATGCGTGTTCAAGATCATGCCAAATTGCAGCACATGATCAAGATAGCAAGTGGGATCATTGGGGTCGATCAGCGGACGAAGAGGAAGAGACTGTGGGGAGGGGAGGACATCCTTGCCACTTTACGCCAGGAGCAGATGGCAAGCAGTACTGCACTGGTGTCACAGCTGAGTACAAACCCAGGGTTTTTCACGTTTGCCCTCACAGTTGCAGACTCGCTGCGCAAAATTCCAGCCGGGCGGGTGAAGAATCCAATACAACACGTGGTGCAGACCTGTCTAGGCCCACGGATAAGAGTTCCGTCCTGGTTTGCGCGGGGGCTGGTGGGATTTCCCGTGTCGGATACAGTGGAAACGAGCCGAGGGCGCAGAGCAGCTCTGATGACCCACAGGATCCCGATCCTGCCGTGGGAACACGCGGCTGCGGGGCGCTTCCTGTGCGAGAGCGAGGGCTCCGTGCGGCGCAGAAACAGCGCCATTGCTTGTGTTTTGGTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170718 lncRNA downstream 144089 14818855 ~ 14819936 (-) True G135864
TU170713 lncRNA downstream 206996 14756522 ~ 14757029 (-) True G135859
TU170700 lncRNA downstream 272106 14673011 ~ 14691919 (-) True G135851
TU170678 lncRNA downstream 313698 14608810 ~ 14650327 (-) False AMCG00012291
TU170623 lncRNA downstream 521923 14440765 ~ 14442102 (-) True G135802
TU170789 lncRNA upstream 453814 15504417 ~ 15507652 (-) True G135913
TU170843 lncRNA upstream 656331 15706934 ~ 15709225 (-) True G135957
TU170870 lncRNA upstream 760193 15810796 ~ 15811753 (-) True G135973
TU170872 lncRNA upstream 762517 15813120 ~ 15816171 (-) True G135975
TU170894 lncRNA upstream 869656 15920259 ~ 15941294 (-) True G135987
AMCG00012295 mRNA downstream 210016 14744315 ~ 14754009 (-) True AMCG00012295
AMCG00012297 mRNA downstream 263890 14698531 ~ 14700135 (-) True AMCG00012297
AMCG00012296 mRNA downstream 269874 14691414 ~ 14694151 (-) True AMCG00012296
AMCG00012287 mRNA downstream 280225 14673333 ~ 14683800 (-) True AMCG00012287
AMCG00012286 mRNA downstream 295338 14666123 ~ 14668687 (-) True AMCG00012286
AMCG00012301 mRNA upstream 13526 15064129 ~ 15105136 (-) True AMCG00012301
AMCG00012304 mRNA upstream 323746 15374349 ~ 15378863 (-) True AMCG00012304
AMCG00012312 mRNA upstream 713416 15764019 ~ 15803519 (-) True AMCG00012312
AMCG00012311 mRNA upstream 813459 15864062 ~ 15874730 (-) True AMCG00012311
AMCG00012315 mRNA upstream 833507 15884110 ~ 15885623 (-) True AMCG00012315
TU170710 other downstream 169867 14725510 ~ 14794158 (-) True G135857
TU170709 other downstream 242855 14717472 ~ 14721170 (-) True G135856
TU170666 other downstream 361223 14599222 ~ 14602802 (-) False AMCG00012292
TU170641 other downstream 429753 14531473 ~ 14534272 (-) True AMCG00012281
TU170639 other downstream 440962 14519830 ~ 14523063 (-) True G135814
TU170840 other upstream 656331 15706934 ~ 15732134 (-) False G135957
TU170896 other upstream 871001 15921604 ~ 15925153 (-) True G135988
TU170997 other upstream 1169523 16220126 ~ 16227243 (-) True G136070
TU171073 other upstream 1262118 16312721 ~ 16314393 (-) True G136125
TU171089 other upstream 1367589 16418192 ~ 16423900 (-) False AMCG00012340

Expression Profile