RNA id: TU170454


Basic Information

Item Value
RNA id TU170454
length 1917
lncRNA type sense_over
GC content 0.36
exon number 7
gene id AMCG00012300
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14964044 ~ 15245994 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCATAGACCCCGTTATGATCATTTTGTGCTAGATCCATAAAGAGCAAGTAGTGCATTTCTGACTTACACAGAGAGTTCCATAATGAAACCCTTACATAAGATGGGGAACATCTGAACTCTCCTTCTGACATACAGAGCCAAactgaatcaattaaaaaacattgtcaaagtgattattttaaaataagtcttaGGAGGAACCTGCTCTTTTTCCCAGGACCTCAGAAGAGCAGTGATGGGAGAGTGTCTCTGTACAAGAGGATCTCACTGCTCCTTGCCTGTGTGTGGATCCTCACTCTCATCTCTGGACTGGCTGTGTACTtcttCCTTGGTTCAATAGATGAGCAAACTTTCCTCAGGGTGAGAGGACGGCACAGTGAGCAGGAGAACAGCAACGCTGAGATAACTGAACTGAGGAAGCAACTGCAGAACAAGGAGAATGAAATCTCCAATCTACAGACAAACCATTCCAGCCTCCAGCAAGAGTTTACAGACTTTTTGAGAGATGTTAAGAATTTGTTAGAGATCAGTCTCCACACATACAGATCCAACACTGAACTGAAGAAGGAACTGCAGAACAAGGAGAATGAAATCTCCAATCTACAGAGCAGATACAGCAGTTTGAATGCCAGCTGTGATGAACTgcagagaaaacaggagacccTTCAGACAAACCATTCCAACCTCCTGCAAGAGCATTCAGACTTACTGAGAAACCACAAGAATATGACAGAATCCAACACTGATCTAAAGAATCATAACTCAGccaccaacacaacacaactgctGTCTGATTATTAACCTTCTGACAGTGAAGGACAGGGACGTGTTTATCTCCAGCTGGTGAGTTTACAGCTTATCTAGTACATACTGACTTAAAATTCATTGTAAAATTGAATGTGGTAAAATGGTTTGTTTCTGTGCTGATTTGTCCCTGAAACAcaagcattatttaaatataatgttcttTTAACTTGATATCAATTTGCCTTACACTGATTATTGTATTACACTGATAGAGAAGATAATTGTATATAATCTATTGTCTCTGTTCTCTGTTAAGTAATTAGTAATCTGTTAAGTAATTGTTTTACAATATGTGAATCATGGTAATAATTGTGTGTGATGCATAAAGTTTTCAGTGGAaatcaatttgaatttaaaagtccttctgtaaataatgtataggTTACCTGTAATATAACTATATGCAATTACATGGATATGTCTAACCCATGCATAACCTAGAGGTTTCTATACAGAATTGTGACATTTGTTCTATAGAATCATATGAGAATATCTACAGAATTGTATATGAATATCTATAAAAAGGCAGAAGGAATATGTACAGCATTCCAAATGAATAACTTCACAATATCTATGCAAATCTATAGAAATATCTGCAGAATCATATAAAAGTGACATAGAAATCAACATAATTTCATAGATACTCTCTATAGAATCATAAGCCTTTAGACAAAACACAACATACTGTAGAtagtatttaatacattataacacgTTCTAAATACCTACCACAAAATTGTGTTGCTATAGAATTATATAGATATTTCTGTAGGGTTTTGTAAGTATGACTAGGATTCTATAGATATTCCTATACAAttctatataaaacatattccaGGTATGTTATAATAAGCTATAATGTATCTATAGGATCATCTATATGATGTCCATATAGTAGAATAAAGGTTTCTATAGGTAATTGCATGTTATTTCAATGGGGTaccactgtactgtactacttaTAATCAGTAAACtatgggctagaccaaatcaaagctttgacctgCAAATCataaagtacaaacctgtatcctgTGCTGCAAACAAAGCACATGCTCCATAAGGCTGAACTGCAGTAACATAACTACCTTCCCCTCCCCTTGAATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170469 lncRNA upstream 70293 14974371 ~ 14979342 (+) False AMCG00012300
TU170470 lncRNA upstream 70293 14974371 ~ 14979342 (+) False AMCG00012300
TU170471 lncRNA upstream 70293 14974371 ~ 14979342 (+) False AMCG00012300
TU170474 lncRNA upstream 70293 14974371 ~ 14979342 (+) False AMCG00012300
TU170437 lncRNA upstream 230910 14811738 ~ 14818725 (+) True G135657
TU170523 lncRNA downstream 105891 15351885 ~ 15357725 (+) True G135721
TU170557 lncRNA downstream 438484 15684478 ~ 15689338 (+) True AMCG00012308
TU170447 lncRNA downstream 556435 15802429 ~ 15806653 (+) True G135666
TU170578 lncRNA downstream 565919 15811913 ~ 15812121 (+) True G135768
TU170590 lncRNA downstream 633140 15879134 ~ 15879504 (+) True G135779
AMCG00012298 mRNA upstream 134062 14914584 ~ 14915573 (+) True AMCG00012298
AMCG00012294 mRNA upstream 322852 14712176 ~ 14726783 (+) False AMCG00012294
AMCG00012293 mRNA upstream 394520 14653439 ~ 14655115 (+) True AMCG00012293
AMCG00012285 mRNA upstream 410668 14637970 ~ 14638967 (+) True AMCG00012285
AMCG00012284 mRNA upstream 421670 14624519 ~ 14627965 (+) True AMCG00012284
AMCG00012305 mRNA downstream 150358 15396352 ~ 15397381 (+) True AMCG00012305
AMCG00012303 mRNA downstream 153439 15399433 ~ 15400438 (+) True AMCG00012303
AMCG00012306 mRNA downstream 184294 15430288 ~ 15430887 (+) True AMCG00012306
AMCG00012302 mRNA downstream 225057 15471051 ~ 15474526 (+) False AMCG00012302
AMCG00012307 mRNA downstream 277518 15523512 ~ 15530379 (+) True AMCG00012307
TU170424 other upstream 39832 14988298 ~ 15009803 (+) True G135649
TU170413 other upstream 336994 14710244 ~ 14712641 (+) False AMCG00012294
TU170313 other upstream 463865 14584124 ~ 14585770 (+) True G135573
TU170305 other upstream 613907 14434965 ~ 14435728 (+) True G135566
TU170281 other upstream 659950 14388075 ~ 14389685 (+) False AMCG00012267
TU170537 other downstream 206075 15452069 ~ 15479549 (+) True AMCG00012302
TU170550 other downstream 313910 15559904 ~ 15563836 (+) True G135744
TU170595 other downstream 665254 15911248 ~ 15930848 (+) True G135781
TU170961 other downstream 930405 16176399 ~ 16182668 (+) False AMCG00012318
TU171007 other downstream 1004254 16250248 ~ 16259332 (+) True G136076

Expression Profile