RNA id: TU170471


Basic Information

Item Value
RNA id TU170471
length 1867
lncRNA type sense_over
GC content 0.36
exon number 9
gene id AMCG00012300
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 14964044 ~ 15245994 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAAGGGGGGGCTGACGATCCTGTTTAAATAGAGGATCTGTGAGGGAACAGTCCCTCTCATTTTCCTGTTCACGGCACAGAGGAGTGGACGGTGAATAAAATTTGAAGATGACCTCCAAATATCAAGgtCCTAAATGGTGCAATTTGGGATTTGGAACCTAAAATTAGGTGAAGAATGTGAAGATCTGTGACCAAAGGTCTGCTTTACCTTTTGAGGAGATGGAAGAAATGCTGGCTAAATGGCAGGCTTAACATGGGCAGAAGCATTTTGATGGCCAATTCAGTGGTGTACATGGTATAACTGAACCAAAGCTGGTATGTAATTTAATTCCTGCAAGGATTTCTGATCTCTGGAATGATGAATTTTGAACCAGGTCTCTGATCATGTTGATgacttttgtattattctgaCCCAGAGATCTAAAGACTACAATGAATGCTTCTGCCAACTTTAGTGAACTTCAAAAGTAATTTCCACTATAGAAACTGAATTATTAAATTGGGATATTGCCTTGGAATGTATACTACCTAAGCACCGCTATGCAAGATGTCTGGGCaaacttgcttttttttttttttttttgcacccaTCAGGCTGCTCAGGTCCAATTAAATTTTGTGAGAAAATAACAATTCAGACCATGTTGTTAAAGTTGAAATAACTTGAATAACTAAATTTGCAAGAAAAGATTAACAAAGCAGTATTCCAAAAAATATAGCTGTACTGATGTCTTCATTGGAATATGCTCAATTATTCAGCTCTGTCCAGTGACTTGCCTGTATGGTCTAAGGGTATATAGGAGCCATGTATAgttacaataattaatacaaaatgttagtATTTAAGAAATGCAGAGTTGGATAAATTTTAAAACTTGAAAAGTTTTCTGCTAAATTACTTCAAATTGTGAAGTCTGTTTTGATTGTCATGGTTTTCCTATGATCTATATGATGAATAACTTGACTGACTTTACCATTAAGTCTATTAGCTCTAACTGACCTGGTCCATTGTGAACTTTTTTTGTTCCCCGCCCCACTGGTTAGTTGAGTGTGCTCATAGTCTTAATCTTTGCAGGATTTTGAAGATGCAGACTGCACCCTTGTACTCTGCTGTACTCCTAACTGATGGCTAATGTAAAGCCTTAGTCCTTCCTTATTTCATACATCCTTAGTAGCTATGTTCAGTAATGATAGTATCAAATGTCTGACCTGaagaataattataaattaaagaaCCCACAAGATGCTGATACTATCAGGAATGTCATTAActtctattttgttttctcctttagATCAGTTGAAATGGTGTCTTCAAACTGGCTTTTGCCATGAAGTGATCTAAAGGATTTAAGAATGGTCTGCTGCAGCAAGACTATGATTGACAGCTGGTGGAGGGGGAAGACCCTTATCTATAGTAGCTGCCAATTTCCCTGAAGATCTATGTGGAATTGGCATCTGGGGTTTTAAAACTCTTTCCAATGTtgacttaaaaagaaaagaaattagTATACCATCAGACTGTAATTGAACTACTGCATACAAGTTCAACATTTTAGATTTGGCATTATACTTCCCCACCTAGTGTTCAACTTTATGGAATGCATAAGTTTGGGCCATGAGAAGTTTGGCCATTCAAATCACTTGCCTTTGACTACTAAATACTAAATGGAATAATTGAGGActactttgttttcaacaattCTGTGAATCTGGTATGAGAATTCTAATTCTGTatctaaattacattaaatcaattttgaaTATCAGTTTGTGTAAGTTTGCTTTCTTCCccaatgtttttctgttgtatttgtgCAATTTAACTAATGCTGTACTGCTACCCTGTTACTAGTTTAATGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170437 lncRNA upstream 155646 14811738 ~ 14818725 (+) True G135657
TU170436 lncRNA upstream 169418 14804480 ~ 14804953 (+) True G135656
TU170303 lncRNA upstream 258490 14713780 ~ 14715881 (+) True AMCG00012294
TU170391 lncRNA upstream 267298 14663752 ~ 14707073 (+) True G135625
TU170454 lncRNA downstream 70293 15049635 ~ 15245994 (+) True AMCG00012300
TU170448 lncRNA downstream 187202 15166544 ~ 15808521 (+) False AMCG00012309
TU170453 lncRNA downstream 253445 15232787 ~ 15236153 (+) False AMCG00012300
TU170523 lncRNA downstream 372543 15351885 ~ 15357725 (+) True G135721
TU170557 lncRNA downstream 705136 15684478 ~ 15689338 (+) True AMCG00012308
AMCG00012298 mRNA upstream 58798 14914584 ~ 14915573 (+) True AMCG00012298
AMCG00012294 mRNA upstream 247588 14712176 ~ 14726783 (+) False AMCG00012294
AMCG00012293 mRNA upstream 319256 14653439 ~ 14655115 (+) True AMCG00012293
AMCG00012285 mRNA upstream 335404 14637970 ~ 14638967 (+) True AMCG00012285
AMCG00012284 mRNA upstream 346406 14624519 ~ 14627965 (+) True AMCG00012284
AMCG00012305 mRNA downstream 417010 15396352 ~ 15397381 (+) True AMCG00012305
AMCG00012303 mRNA downstream 420091 15399433 ~ 15400438 (+) True AMCG00012303
AMCG00012306 mRNA downstream 450946 15430288 ~ 15430887 (+) True AMCG00012306
AMCG00012302 mRNA downstream 491709 15471051 ~ 15474526 (+) False AMCG00012302
AMCG00012307 mRNA downstream 544170 15523512 ~ 15530379 (+) True AMCG00012307
TU170413 other upstream 261730 14710244 ~ 14712641 (+) False AMCG00012294
TU170313 other upstream 388601 14584124 ~ 14585770 (+) True G135573
TU170305 other upstream 538643 14434965 ~ 14435728 (+) True G135566
TU170281 other upstream 584686 14388075 ~ 14389685 (+) False AMCG00012267
TU170274 other upstream 595676 14377672 ~ 14378695 (+) False G135544
TU170424 other downstream 8956 14988298 ~ 15009803 (+) True G135649
TU170455 other downstream 140383 15119725 ~ 15623881 (+) True G135670
TU170537 other downstream 472727 15452069 ~ 15479549 (+) True AMCG00012302
TU170550 other downstream 580562 15559904 ~ 15563836 (+) True G135744
TU170595 other downstream 931906 15911248 ~ 15930848 (+) True G135781

Expression Profile