RNA id: TU170537


Basic Information

Item Value
RNA id TU170537
length 7942
RNA type TUCP
GC content 0.45
exon number 5
gene id AMCG00012302
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15452069 ~ 15479549 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGACCCTCCAGCTCCTGCACTCCCCCCTCACAACAAACTGGGAAACATCAGGGCAGTCATTACTGCAGCCAGTGTGGGAAGACTTTCAGTAACTCTACAAACTTTAAAATTCACCAGCGtgttcacacaggagagaaacctttctgctgctcccagtgtgggaagagtttcaatAACCCAAATTGTCTTAAAATTCACGAGCGAATtcatacaggagagagaccgttcTGCTGCTCTGAGTGTGGGAAGTGCTTCATACATTCAGGAAACCTTAAAACTCACCAAAGggttcacacaggagagaaaccgttctgctgctcccagtgtgggaagggtttCACTCAGGCAGTTTCCTTGAGAAGACACGATGAGAGGAAGCACAAATGAGTAACGCACAGTTGACCActtcactgacacactgagaaacTAGCGTGATCCCTCCTCCCTATGgaTGGAGTCGTGTCGTCCAGAGATGTTTGATTTCCGGGGGGTGTCCATGACTCCCTATTTCACTGACAACTATGACAATGTAGAGAAATTCTCAGCCAGACCAGACGACATTCTCATCGCCACCTACCCTAAAGCTGGCACTACCTGGGTGTCCCACTTGCTGGATCAGATCTATTTTGGAGACGACCCCAAGAGCCTGGCATCTCGCCCCGTCTATGAGAGGGAACCATTCCTGGAGATCTGTGCCCACAATTTCATATCTGGTCAATGTGGGACACACAGTGGAGCTGTGGGAGGGTGCATAGTCTCTCTCTGAAGTATGTACAGCGGGTGGggcaaccctgttcctggagatcCGCAATGCTGCAGGTTTTACAGTTatctctaaatcaccaatccCTGATCATCTGCGCCAGCGTCGCGAACCAAAGTTGTCTCGGCCACAGGGGGCGATCAGGAGAACTTGGCAGGTGTATCACCCGTATGGAGCGGAGATTGTCTTGCGCccacacgatgtagtctgggggagtgtagtCCTCCCTGGttgttgatgtaggccaccactgacgtgttgtccgtccgaaccaggACGTGCCTGTCTGCCAGACCGTGGCGACAGTGGTGCAGCACCAGTCGCAcagcttgcagctcctgtacgttGATGTGTGTGGCTgctccacactccttggactcCCACCCCATTCCAGCGCCCCAGCCTGTTCCGGAggcatctgtggtgatgacttcccatcTGTGCGGGCATCCGAGGGGGGAGCCGAGGTGCAGCTTGTTCcgatttctccaccaggacagtgcctgccagcatgttgaggtcacggtcagtgggtggtgtttgtgtctcgctgggtgCATCATGTGGGTGTTTACTCAGCGTTGTAACGAGCGCATGTGCATAAGGCCCAGGGGGAGAATATTCGAGGTGGCcaccatcagccccaacagtttaTGGAATTTGACCAGTTGGAGAGTCGATGCTCTTCTAAATGATGCCAGGCATTTCTCCAACAACTCGATTCTGTCTCTGAacaggtaggcaagcatgtTCAGAGAGTCTAGCCTCATCCCCAAGAAGTCCACAGTCTGTGCGAGTTCGAGGAAGCTTTTCTCTATGAGAACTGCGAGACACAGTGCAGTCACATGCCGTATGACCTTCCTCCGCCTGAAGACTGGAGTCTgtgcacaccagccagtcatccaggtagttcatgatccttatcccctttgtcctgaggggggggccaaggctgcgtccatgcacttcgAAAATGTGTGGGGAGCCAGAGAAAGGCCGAACGGCAGCACAACTTGTACGCCTGGCGCTGGAAGGTGAAGTGCAGGTATTTCCTGTGTGCcgggaggatggggacgtggaagtaggtgtccctgaggtctattgacgTGAACCAGTCGCCTGGCCAGACAGACTGAAGGATACACTGCACCGTCAACATGCGGAACGgtgttttcttcagaaacatgttgaggcccctcagattGAGAATGGTCCTGAAGCctccgtccttctttggcaccaggaagtaccccgagTAGAAGCCTGCTCGAGCCTgcttgccattggtcgagtTCAGTCGGTCGGGCACCATGGAATATCCACCAACTCAGCTGCACGTCTCATCAGAGCCCTGAATTCTATGCTTGGGGCTGGGAAGTGCTCCAACACCGAACTCGCCACCTCGGTCACCTCAATAAAAGATGGAGGGTCTGATATGTCTGAGCGCGATGCCACATGGGACACAGCGTTTCTTccggtggtggtggtagtggtagCTGTAgctgaggagggaggggggcgCCCTCTTCTGGTGCGAGATGCGCCCACATGGTGTTTAGCATACACTGCTTGGAGGCCAGCGTATTCTTAAACAGTAAAGCAGCAGCAATGTCGTCCCCTTCCTGTCTCCTGCGGCATGGAGGAGTCCGCGGAGTGGAGCGTCTGGACGATCGAGAGCAGGATCGTCTGGCTCTTGGGGACCTCCATCTGGGGGAGCGTGCTCTCCTCCCCGGAAGTGCGTCTGCGAGGAAGCGGAGAGGGGGAAACAGACTGCACCCTCGCTGGTGAAGTCCTGGGGGAAGAGGACCGCTGTCCGTTTTGCCGTCGCGAGGGGACCCTCGTGTTGCTGGGCACTGAGAGGGTATGGACAGGCAGTCTCCAGTACCTGTCATTGTCTGTGTTAAaactctctccgtctctctttctcactgcCTCTCAGGGGTGGAGCTGATAGACAACATGACCTCGTCTCCTCGCCTGATCAAGACTCACCTACCGTACCAGTTGGTGCCAAAGGGCTTCTATTAACAAAACTGCAAGggatGGTGGGGGACTGGCAGAATCACTTCACTGTCTCACAGAGTGAGGAGTTTGATGAAGACTACCAGAGGAAGATGAAGGACACCACACTGACCTTCAGGATGGAGCTATAgatagagattgtgtgtgtacagaactgtactgcattatattatccctgagagagagactgtcTATATCaagggttcccaaagtgcggcccaggggccaaatgcggcccttgAGAATGTTTGGTGCacccccccaaagccaaccttcaaccaccccttttctgaattgttactatatttttacactttcatgcaatttgtaacagaaaatattcTATGTAACTTGGgggataataaataataaaacaattaaagttagggaacatttatgaactgacatgtataggaaataaaaaagtatgatttgggacatattttgttttcatcggtGGTTCATTATCTACTGtagcccccccatcccatgcaacctctggaaattggccctccatcaccagacactGGGAACACCTGGTCTATATGTACTCTGCTGAAGTATAATAAAGAGGTTGGGGGGGAACAACAGGAGAGAGTGGAACACTCTGTCTGTTGTATGTGGGTTTTGAGAGTTTTCCACTGTCCACGTTAAGGTGCACCTCTGCCTGTCCATTAGCGTAATTTCCATGGTTGCTCAGGTGCACCTGCACCTGTGcccaaactagtttcaggaggtACAGTTTCATATATCGCACCGGCCGAGTCCCAAACTGCTCTAGTGTCAATTACGTAGCCAGATGCAACatcactgcattttgaaattgtaactacaataaTGGCAGCCATTATtgatgtgtgtttaccttgggaagacTATGAAATTAGAGCACTTATTAATGTATGGTCTGGATTTGGTGTTTCACATTCACTTCCTGGGGCAGTTGTACCTAacgaaaatacaatataaatgtggGCATCCATGTTTAGGTGTACAGGTACGGCTTGGAGATACCGAGGTACACCGATGGGTGGACAGTAGATCATTTCTATGTTTAGTATCACAATACTCAATACTGAAATGATACTCTATACTGGAAACAATACTCTAACAAAACgaggacaaaaatatataccgtaaaacttccaatactcgcTGGGTCTATcgaatatatatactgtacatccAGTACATGgaatcttagactgctaacagaattaccagtatcttgttttcaatccagtgtatagttcaccatacattgaatgtaatttgtttgcatcctttgaaagcaatttaataacaaataataatacatacattaaaataaaagcctggcctattagtacttctacaatgaagccaTGTTTCCAGGCtattcttaccctgcatgagtctgcgatgtctttttatttatgaatgtttaatacaaatgctggtctccaattgacgccagggcttcttgcagttatttggaataaatgccaggggcgtttaattgaagttttacggtatggttgggagggttacttttaaaaagtattccgttacagaatattgattaccttgttttgaaaataatctgtaacctaatccaatacattactccaagtcagtaacgtaatcagaatagttgtagaatactttttttcttaaaaaacgAAGGCAGctgagttcaagaagtgaaacaaaatgtactacacatatctaatatggatgacggatttaaattgtttatttgaatccacagtacaaacaattaaaatggtaagatttgcatcagtttaattatttatttatactttgcattttgtagtagtggatgcatttttaaacaagtgaaactgcattttgatacccTTTAAATTTTTAGAAActgacataaatcagacatcaaTAATGAGTTCTTGTCAAGGTGTATTCTGTTCACCGTCATTTGTGATGCAGGCGTTGTTTTAATAGGTACTTAAATAGGTACCTTGTCTGTAAGTTGTAAGTACgtttaatgcttataaagactacagtttattttgttctgtctgtgaagatacactgatcaagcaacttgctataataaaggggATATAAATGCCGTATATTGTTCTATCCATGAGAAACGCAGTCAACGGTTTCAATGCACCAGCACCGGAAACACagattgaaatcaatgcaattagggcattatttttaagtatcaatgAGCtaggaatgttatgcatcttgtttcccTAACACATCCTGTTAAAGAGCATGCCATGCCACGTAGGACTAGTTCATTCAGTCTGTGcgatttgtttggttttagactataaacatgttttatgttgttattttggtattatattaagtcttTAATTGTTAAtgtcacagaaccagctaggattcacaggaactatttgtaatgtacgtGGATGTATCTTAAATTGAGATAACTTGAATAACTtattacttaaaatacaaactatcgATAACGTGTTTGGTTATACTATGCCTGTGCtgccgttttgcttattattatgcttttatacaaatatgtaattattaaatcgtaattattattattttttattttttatgctaaGCACAATTGTATATTGGCTgcacaaattataaaaaaaacagacagtaCATTGTCCTATAGGCACATCGtgtattgtactttaatatactttaacaattgcctgtacttccaCAAGTGAAATCCCTGCtaaaacacaatgttgccacaatgttgtaggACTGTGTAGGTCTGTTGTAGGACTACTAGCTGGGATGCTGACTGCAGCTCCATTCTGCCTGCCTGTAGAATGGCGCTGAATCAGCCGCTCTTTGGCTAgatcattaataaaaacaattttgcaAAAATACTATATGTGGGCCCCTTCAGAttcccttacacttgtacaaTTTTGTGTATATGatgtataagtaatcagtaatgTCCTACTCTTTAAAAAAGAGTAATCAGAATACTCAGTCTGACAGGAGTAACTGTAACCGGAATTCAAGTATCAAAATTCCGTAATCTGATTACATAACGCCACTACTTGTATTCtgttaccccccccccccaaacactgAACAATATGCCGATAACTGGGTAGAAAAATCGAActataaaactgtattaaatcTAGATCTAGAAGAATTAAATAGCCACAAACATAattcaaacaatatttttttacgAAGACCTAGCGAGAGAAGAACCAGATTATGAATATCTTCACTGAGGTTTACAtcgacacacacactatatatacagtgggtaCCCCTGACTCCAAAATATAAGCATCTGTTTTACAAGAAAttaagttaaaagaaaaacaggtttcAAAATTCTGTTTTTTATCATGCCCCAGGTCATAAGGGTCAACCTCCAGTTACTATCTACATTATACATACTTTTTTGTTGTATCCCACAGAAGACATGAGTCAGCCTTTATCTGGCACCTTCTGCTCAATAATACATTCAGTTTAGATACATTTCTGTTGATTCCTACATTAATGGTACTGCAGTTTAATGTGATGAACTTATTGTATCATTTATTAGAATTACTATTTAACACCCCTGCCCCATCTCGGCTTAATCAGCTGGAAGATGTACAGTTGTCTCTATACTAGGGGTTCTTAACCAGGGGGGTGAGAGacggcttatttatttataaacggGTCCAGTCTGCTGCCCACTACAATGAAAAGCTACTTAGAGCACATATCTTCAGCCTTTAACGtatctgtgtgttatttaatgaGAGTGAAGAGAATGTATTAActttataatttcattttcttctgtaattCCTCTATTATATGAACCCTCTCGTGAGATTTAAGGTTTCCTGCATGACCGAATCTCTTGCCACAGTGGGAACAGCTGTGTGGTTTCTCTCCAGTATGAGTGCGCTTGTGATAAATAAGGCTGGTTGCCtgactgaagctcttcccacactgggagcaggcGTACggcttctctcctgtgtgaatgcgctggtgagatttaaggTGGCCCGCACGcctgaagctcttcccacactgggcgcagctgtgctgtctctctcctgtgtgaatgcgctcgTGTGATCTTAGGTGGCCTGCATGAATGAAGCTCTTTCCACACTGGGAGCAACAGAATGGCTTCTCTCCGGTGTGAATGCGCTCATGATAATTAAGGCTTGCTGACtgactgaagctcttcccacactggttgcagcagtatggtttctctcctgtatgAACGCGCTCATGTGATTTAAGGCTTACTGCATGACTGAAGCGCTTTTCACAGTGGGAGCAAGAGAATggcttctctcctgtgtgaatacGCTGGTGAGATTTAAGATTTGTTGCCTGACTGAAGGTCTTTCCACACTGGGTGCAACTGTATGGCTTCTCTCCGGTGTGTACACGCTGGTGAGACTTAAGGCTTACTCCATTACTGAAACGCTTCCCACACTGTGAGCAGGagtacggtttctctcctgtgtgaaccCGCTGGTGAGACTTAAGGTTTACTCCATTcttgaagctcttcccacactgggagcagcaaTACGTTTTCTTTCCTCTGCGAGTGCATGAGCGAGAGGGTCTGGGGGACAGCGGTCTGCTCTCAGTCCTCTTTGAACTGTCACTCCCTCCACTGAGACCCATTGTCTGGTTCACCTCTTCTGTTCCACATAGTTGATTTACAGGGAGGTCAGGTTCCAGTTTGCAAAGGCTTGTAATATTCTCCAGTCTAAGATTACCAAGTCCATCTTTCAAAGCAGTATGCATTCCTGACTCCAGTTCAACGTCCTCTGTTTTAATCTGATCCGGCAACATATTGTGTTCACACTGTGTTCCAGTAGAGCCTAGTTCAAcaccagctgcactgggtccacactcagatCCCAGTCCTCCAAGTCCCAGTGTTGACCCCTTAGTCTGTGGCTCTGCCCTGTGGCCAGACTCCAGTCCCCtgagctcctcctcactctgtctgctcctgtgctgctcagTTAGGCCCCGTTCGTCTTCAGTAGCTGTGGGCTCTGTATCCCGCCTCAGACTGAAACCCCACTCCTGCTGCTCAATGGGGGCCCTTTCCTCAGAGACTTGGAGAGCGCTGGCCTCTATTGCTCCTGTGGGAGAGACAAGAAATAAGAAcagcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170523 lncRNA upstream 94344 15351885 ~ 15357725 (+) True G135721
TU170454 lncRNA upstream 206075 15049635 ~ 15245994 (+) True AMCG00012300
TU170453 lncRNA upstream 215916 15232787 ~ 15236153 (+) False AMCG00012300
TU170469 lncRNA upstream 472727 14974371 ~ 14979342 (+) False AMCG00012300
TU170470 lncRNA upstream 472727 14974371 ~ 14979342 (+) False AMCG00012300
TU170557 lncRNA downstream 204929 15684478 ~ 15689338 (+) True AMCG00012308
TU170447 lncRNA downstream 322880 15802429 ~ 15806653 (+) True G135666
TU170578 lncRNA downstream 332364 15811913 ~ 15812121 (+) True G135768
TU170590 lncRNA downstream 399585 15879134 ~ 15879504 (+) True G135779
TU170591 lncRNA downstream 399585 15879134 ~ 15900621 (+) False G135779
AMCG00012306 mRNA upstream 21182 15430288 ~ 15430887 (+) True AMCG00012306
AMCG00012303 mRNA upstream 51631 15399433 ~ 15400438 (+) True AMCG00012303
AMCG00012305 mRNA upstream 54688 15396352 ~ 15397381 (+) True AMCG00012305
AMCG00012300 mRNA upstream 317930 14964044 ~ 15134139 (+) False AMCG00012300
AMCG00012298 mRNA upstream 536496 14914584 ~ 14915573 (+) True AMCG00012298
AMCG00012307 mRNA downstream 43963 15523512 ~ 15530379 (+) True AMCG00012307
AMCG00012309 mRNA downstream 163607 15643156 ~ 15679263 (+) True AMCG00012309
AMCG00012308 mRNA downstream 204958 15684507 ~ 15689290 (+) False AMCG00012308
AMCG00012310 mRNA downstream 284480 15764029 ~ 15815714 (+) True AMCG00012310
AMCG00012313 mRNA downstream 409149 15888698 ~ 15896509 (+) True AMCG00012313
TU170424 other upstream 442266 14988298 ~ 15009803 (+) True G135649
TU170413 other upstream 739428 14710244 ~ 14712641 (+) False AMCG00012294
TU170313 other upstream 866299 14584124 ~ 14585770 (+) True G135573
TU170305 other upstream 1016341 14434965 ~ 14435728 (+) True G135566
TU170281 other upstream 1062384 14388075 ~ 14389685 (+) False AMCG00012267
TU170550 other downstream 80355 15559904 ~ 15563836 (+) True G135744
TU170595 other downstream 431699 15911248 ~ 15930848 (+) True G135781
TU170961 other downstream 696850 16176399 ~ 16182668 (+) False AMCG00012318
TU171007 other downstream 770699 16250248 ~ 16259332 (+) True G136076
TU171045 other downstream 914150 16393699 ~ 16432813 (+) True AMCG00012338

Expression Profile