RNA id: AMCG00012304


Basic Information

Item Value
RNA id AMCG00012304
length 2502
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00012304
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15374349 ~ 15378863 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTACTTTCGGGGTTAGTAATGTTTGTGAGTGAACTGGGCTTCTGCGCTGAGTGAAGAGGCGTTTGGgttattggttgttgtttttgttcctctCTTCTCTATTCAGAGGCTTTATCAGTTGCTTGTTCTGTGAAATGAAGCTGTTCCGCATTGTGCTCTGGCTCTGTGTAGGAGCATTATTACCCGCACTGATCTTGGCCAGCCCAGACTACGACAATGAGCCTGCAAGAACAACCGCTGTCAATACCGAGCCTAAAAAGTACCGTGTTCTCCCCATGTTCATCCAGGCGTCTGCTCCTCTGGTAGACGCCAAGAAACTGCGTCCGGCCAATGGCAGCGAGCCCATGCCTGATGATCTGAGACGCATCCTGTTTCCTGGCGCCAACCTGCGGAAAGGCGTGCAGCCCAAGAAAGTCCAGAACCGAGGTGTTGCGGTGTGGGGAGACTACAGTAAGCTGTATGTGGCAGTGCAGAAGGACATCCATGGCTTCAGGTGCAGGCCTTCAGAGCTCATGCTGGGGAGCTGTGCTGTCAGCCAGACCTCAAAGCACTTCTACTACTTCACCTATGGGCTTAACGAGTGTGGGACCAAGCGATCGATCGTTAATGGCCAACTGGTGTACTCCAACACACTGCGCTATTCTCCGCCAGTGTTCTCTGGCCCAGTTATCTGGGGTGTGTCCTTCACCGTGCCCATTATGCTAGTCTACAACAGGTTCCACTATTCCTACAAGATTGGCTATAAGCCCACATTCCCCCAGCATGGCAGCACCCTTCCAGGCATGGACAAATTTGCCTTCTTTAGAGAGCTGAAGAACAGACATGGTTACGTCCTGGTCACCACCAATGAGCACTGGCAGAGACTCTCCCCAAAGAACGTCTACTACCTGGGCCAGGCCATGTACTTCCAGGCCACAGGCTATTTGGCCACGACAGGGCAGCGGCTATTCATCCAGTCCTGCTATGCCACGGCCTCTCCGGATCAGCACTCCAAACCCAGGTTCACCGTGATTGACAACTTTGGGTGCCTGGTAGACAGCAAGGCTGATGGGTGCCAGTCCAGGTTTGTGCCGTACAGGAGGAAGGATGTTCTCCGCTTCACCATTGATGCTTTCCTGTTCCAGAAGACCCTGTCCAAGCATGGGATGACTGAGCTGTACATGCACTGCACCATGACGGTGGCAGAACATGTGACTCCAGGCACCAAATCCTGCACCTACAACAGAAAGGCTAAAAGGTGGGAGGAGCTGTATGGAAACCatgctgtgtgcgtgtgctgtgACTCCAGGTGTGCTGCTGACCGGGCAGAAGATCAGAGGAGGAGCCTAGTGACAAGTCACCTGCTGCCCTTGGAGCATCACCGTGCTATTCCTTCCTCTGCGGATGGAAACCGTAGGTCTGGGGAAGAAGCCGTTCCAGGATTGGGGTCCCATACTGAAGGAGAGCGAAGGCAAGTGGCCCCTCGGCCAAAGGAGTCTGCAGCAGTCGACAGTCCGGCAGCGGTAGAGGTGGATTCCAGGGATGCTTATGACTCCGTGGCATCGGAGGACTATGCAGCTGAACTGTTTAAAGGTGAGGAGTTGTCGTGGGAGAGCTTTCATGATGAAGATGAGCGAGAAGAGCTCGCGAGAAAGGAGGCTGACTATGACTATGAACGGTTCCCAGTCTAATGGGATGGCTGGCAGGTCCCTGAGGAATTCCAGTGTCTGGTTGTTTCAATGAGGGGGGGAAATAAACCTTCAAAATGGTTGTGGGTCTCCTCTCTTTATTGCCAATTCAGTTCCCAGTCCTTTTGGAGGACTGTTGGGCTGCACCACAAGACACTGTGGCAGACCTGACATGATTGTGATCCCCTTGTAAAAGGGTTCAGCGGTTTCCTTCCAAGGCTTTATGGCATGAGCTGGGAGTCCAGTGCACTTAATGCAGGTGGAACACTATGCTCCACTTATTGTAACTTCTGGCATTATTCATGAGTTCAGATTTTCTACAGCTGCTTGTATAGCTTAGAGGTCCAGTCCTGTATTTTGGTGGCTTCTTATCAAAGCATCCCCTGTGGTGATTGTAGACTTGCAGGGTGGGTCATGTAAAATGGGGTTATAAGGCCCTGATGTTGAGGGAGTAGTATTGACTGACTTAGAGGCTTCTTGTATTGGGTGCTTTTAGGAAAGGGGATTTGTGTTGTGTCCAGCACTGTCCTTTAAAGGGTTCAGTGGTTTATTTTCTAGGCATTGTTTCATGAGCAGAGTCCAGTTAACTGGTTTTATGTGGGTGGAACTTTACTTTCAATAACCCACATAATGAGTCCTAAGTGGCTTATCTGTATTTGCATGTGGATCCACTTGTACAGCACTGGATTGAAAGTACCTCCGTTTAGTGTCCAAAGAAAGTCATCCTGTACAGTTAAGTAAACTTACTGACTGAGTGGAGCCATAGATGTGCTTGGAGAATAAGATGAAGGGTTTAATGAGACTAATTGATTGTAACTGGTGACCAgaagaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170718 lncRNA downstream 554413 14818855 ~ 14819936 (-) True G135864
TU170713 lncRNA downstream 617320 14756522 ~ 14757029 (-) True G135859
TU170700 lncRNA downstream 682430 14673011 ~ 14691919 (-) True G135851
TU170678 lncRNA downstream 724022 14608810 ~ 14650327 (-) False AMCG00012291
TU170623 lncRNA downstream 932247 14440765 ~ 14442102 (-) True G135802
TU170789 lncRNA upstream 125554 15504417 ~ 15507652 (-) True G135913
TU170843 lncRNA upstream 328071 15706934 ~ 15709225 (-) True G135957
TU170870 lncRNA upstream 431933 15810796 ~ 15811753 (-) True G135973
TU170872 lncRNA upstream 434257 15813120 ~ 15816171 (-) True G135975
TU170894 lncRNA upstream 541396 15920259 ~ 15941294 (-) True G135987
AMCG00012301 mRNA downstream 269213 15064129 ~ 15105136 (-) True AMCG00012301
AMCG00012299 mRNA downstream 323746 14964025 ~ 15050603 (-) True AMCG00012299
AMCG00012295 mRNA downstream 620340 14744315 ~ 14754009 (-) True AMCG00012295
AMCG00012297 mRNA downstream 674214 14698531 ~ 14700135 (-) True AMCG00012297
AMCG00012296 mRNA downstream 680198 14691414 ~ 14694151 (-) True AMCG00012296
AMCG00012312 mRNA upstream 385156 15764019 ~ 15803519 (-) True AMCG00012312
AMCG00012311 mRNA upstream 485199 15864062 ~ 15874730 (-) True AMCG00012311
AMCG00012315 mRNA upstream 505247 15884110 ~ 15885623 (-) True AMCG00012315
AMCG00012314 mRNA upstream 516226 15895089 ~ 15907082 (-) True AMCG00012314
AMCG00012323 mRNA upstream 614900 15993763 ~ 16005231 (-) True AMCG00012323
TU170710 other downstream 580191 14725510 ~ 14794158 (-) True G135857
TU170709 other downstream 653179 14717472 ~ 14721170 (-) True G135856
TU170666 other downstream 771547 14599222 ~ 14602802 (-) False AMCG00012292
TU170641 other downstream 840077 14531473 ~ 14534272 (-) True AMCG00012281
TU170639 other downstream 851286 14519830 ~ 14523063 (-) True G135814
TU170840 other upstream 328071 15706934 ~ 15732134 (-) False G135957
TU170896 other upstream 542741 15921604 ~ 15925153 (-) True G135988
TU170997 other upstream 841263 16220126 ~ 16227243 (-) True G136070
TU171073 other upstream 933858 16312721 ~ 16314393 (-) True G136125
TU171089 other upstream 1039329 16418192 ~ 16423900 (-) False AMCG00012340

Expression Profile