RNA id: AMCG00012308


Basic Information

Item Value
RNA id AMCG00012308
length 1970
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00012308
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15684478 ~ 15689338 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGAAGTGAGGCAGACAGAAAAGAAGCTGCCCTGCACAGATCTCCCTTATGAAAAAGAAGTTTAGTGATTGGAAACCAAGATTTGAAATGGCCACAATTGCAAGAACATTTGCAGTCCCTTTCACAATGGCTGGGGACACGCTGAGaaacaggcacacagacagaccgaGACTCAAGCGGAGAGGCAGTCTGTATTGGTCACGACCCGATTTCTTGCAGTGCACCTGCCAAAGCTCAGATGAGATCAGCgggttctCTGTGGGCCAGAAGGATCCCAGTGAGACTGTTCTGTAGCTGACTCCTGTGTTATGCATGGTGTGGGACTAAGCTTTCATTTAGCTCAGTTGTGTTCCACACTGAAGGAGGTTGAGATCCTGATAAAGCAGAGACCAGTGAGACCAATGCTGCTTTAGCTAATGTATTTATAGCCCTTGTGGATTCAATGTTATAAAATCACGTAATTTTAAAGTCCTTGTAGTACAGTACGCTCACACAGCCTAGTAAATCTAATCCCTGTGCAGTAGAATCCAGTATAGTACACTCATACAGCCCAGTCAGTATAGTCCCTTTGCTGTACATTAACAAGACACTCTCATAATCTACCCCAAATAATCCCTGTGCAGTAGAATACTTAATTAGTAGAATAGTTGGAAATTCGAATTTTTAAAAGGATCACAGGAAATACTAGGCCAGTAGTCCACACGGATCTTTAGCAGCAATGGTGTCTTAAGTTTCTGTCTTTATCAGGCTCTGATGGcaaatgttttgacatttcaCATGTGTGAGAGTCAATGTGCTCTACACTAGAACTAACACTAGTCTCTTTTAGAGTATGTTAACTGTTAGAGACTAACAGTAGGCAATGACTATCAGAATACCAGAACAGTTAAAAGGTACACTATAATaccaaaagtattgggacaTTCCTCACTCCTCCATTAATTGTTTGTGGTAAACTGTGTTGTGTACAGGGGGACCATGAGCAGCCAGTGAAGACTGGACATATTCAAGTTTCCAGTTGGCTTTAATTGATGAGGGCCCCCTATACATCTACCAACACAGCATAACACAACacactatattaacacaataCAATAGAGAACCCTTTCACAAATATGGTAGCAAACACAGTAGTTATCTTTCGAGTCGAGAATGCTACCCAATGGGGAGGGTCTTAAACCTGTTACCATGGAACCTCacattgtctaacaaagctggGTATTGGCCGCAGTACTTGCAGCTCCATACAAGCACCCCCCTCCTGTTTcctgcatatatatttaaggtaCTTTTTCAGATAAGTTgcattcactttcattttcaagaGAATAGGATCTGAGCCATACCACCGACCTGTTATCATTGATATATGGCTAAACCAGCTGCAGTCCAGAATTCCTTTTTTGTCCCTAAACTTTTGGTATTGTAGTGTGAATATGTACATaagttgaatgtatttatgactgttcaaattggtttctgttttatgttCGTACTATGATACTGGTCACACTGTGTGGCATTTTCAATTATACAGTCTGTCATAACAGTTAATCCACTTTGCTGCTTCCAAGAGTACAATGCACATAATTAATATGGTATCATTTAGATAAATCGTACTAGTAGCTGTCTATTTACACAGtaactcataagaacagtgtaattatgcattattacaatgtaggCCTACTTAACgtgtaataatgattaacagtatatgCAAGTACACAATTATCTGTTAAGGATGCCCATCAGGAGTCTAACAATGGCTATAGCTATACCTTTGCAGTAGCTTTGGAGTAGCTATACCGGGCATgacccagtttttttttttacactttttgtaataaagcataattacactgcttatgagtaactacaaatgtagtATATACTGCAAATACACTAAGTAGGGAGACACATTGCAAAGTGTTACCAGTAATGATGTCACTTCTTGTAGAAGTttcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170523 lncRNA upstream 326782 15351885 ~ 15357725 (+) True G135721
TU170454 lncRNA upstream 438513 15049635 ~ 15245994 (+) True AMCG00012300
TU170453 lncRNA upstream 448354 15232787 ~ 15236153 (+) False AMCG00012300
TU170470 lncRNA upstream 705165 14974371 ~ 14979342 (+) False AMCG00012300
TU170447 lncRNA downstream 113139 15802429 ~ 15806653 (+) True G135666
TU170578 lncRNA downstream 122623 15811913 ~ 15812121 (+) True G135768
TU170590 lncRNA downstream 189844 15879134 ~ 15879504 (+) True G135779
TU170591 lncRNA downstream 189844 15879134 ~ 15900621 (+) False G135779
TU170939 lncRNA downstream 413604 16102894 ~ 16103304 (+) True G136025
AMCG00012309 mRNA upstream 5244 15643156 ~ 15679263 (+) True AMCG00012309
AMCG00012307 mRNA upstream 154128 15523512 ~ 15530379 (+) True AMCG00012307
AMCG00012302 mRNA upstream 209981 15471051 ~ 15474526 (+) False AMCG00012302
AMCG00012306 mRNA upstream 253620 15430288 ~ 15430887 (+) True AMCG00012306
AMCG00012303 mRNA upstream 284069 15399433 ~ 15400438 (+) True AMCG00012303
AMCG00012310 mRNA downstream 74739 15764029 ~ 15815714 (+) True AMCG00012310
AMCG00012313 mRNA downstream 199408 15888698 ~ 15896509 (+) True AMCG00012313
AMCG00012316 mRNA downstream 252342 15941632 ~ 15984389 (+) True AMCG00012316
AMCG00012317 mRNA downstream 297769 15987059 ~ 16057103 (+) True AMCG00012317
AMCG00012321 mRNA downstream 368563 16057853 ~ 16100861 (+) True AMCG00012321
TU170455 other upstream 60626 15119725 ~ 15623881 (+) True G135670
TU170550 other upstream 120671 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 204958 15452069 ~ 15479549 (+) True AMCG00012302
TU170424 other upstream 674704 14988298 ~ 15009803 (+) True G135649
TU170413 other upstream 971866 14710244 ~ 14712641 (+) False AMCG00012294
TU170595 other downstream 221958 15911248 ~ 15930848 (+) True G135781
TU170961 other downstream 487109 16176399 ~ 16182668 (+) False AMCG00012318
TU171007 other downstream 560958 16250248 ~ 16259332 (+) True G136076
TU171045 other downstream 704409 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 954467 16643757 ~ 16648562 (+) True AMCG00012348

Expression Profile