RNA id: AMCG00012310


Basic Information

Item Value
RNA id AMCG00012310
length 651
RNA type mRNA
GC content 0.53
exon number 9
gene id AMCG00012310
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15764029 ~ 15815714 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGGGAGTCGGCTCCTGAGGAACAAGCAGCGATATCCACTTCAGTGGCTGGGTCCTCCAAGAGTGGCAGAGCAGGGATGGAGTCTGATCGTCCGAAGCTGTTTGATTTCCGGGGAGTTGCTATGACTCGCTATTACAGCGAGAAATTTGACAAAGTGGAGAATTTCTCTGCCAGGCCAGATGACATTCTCATCGCCACCTATCCTAAAGCTGGTACTACCTGGGTGTCCCACATGCTGGATCAGATCTATTTCGGGGATGACCCCAAGAGCCTGGCATCCCAACCAGTCTACGAGAGGGTGCCCTACCTGGAGATCTGTGCCCCCGATTTCTTTACTGGTGTGGATCTGATAGACAGTATGACCTCGTCTCCTCGCCTGATCAAGACTCACCTGCCGGTCCAGTTGGTGCCAAAGAGCTTCTGGGAGCAAAAGTGCAGGtgttgtTTGGGTCCTGGATGGTGGGAGCACAGACAGAACCATCCCCAGCTACTGTACCTCTTCTATGAAGACCTGAAGGAGAGCATGAGGGACAACAGCATGACCAACTACTCCACCTGCGCTGTGATGGACCACAGTGTATCTCCGTTCATGAGGAAAGGGATGGTGGGCGACTGGAAGAGTCACTTCACCGAGGAGGTCATGTAA

Function

GO:

id name namespace
GO:0006805 xenobiotic metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170557 lncRNA upstream 74691 15684478 ~ 15689338 (+) True AMCG00012308
TU170523 lncRNA upstream 406304 15351885 ~ 15357725 (+) True G135721
TU170454 lncRNA upstream 518035 15049635 ~ 15245994 (+) True AMCG00012300
TU170453 lncRNA upstream 527876 15232787 ~ 15236153 (+) False AMCG00012300
TU170470 lncRNA upstream 784687 14974371 ~ 14979342 (+) False AMCG00012300
TU170590 lncRNA downstream 63420 15879134 ~ 15879504 (+) True G135779
TU170591 lncRNA downstream 63420 15879134 ~ 15900621 (+) False G135779
TU170939 lncRNA downstream 287180 16102894 ~ 16103304 (+) True G136025
TU170940 lncRNA downstream 316117 16131831 ~ 16136715 (+) True AMCG00012324
TU170957 lncRNA downstream 356025 16171739 ~ 16172095 (+) True G136040
AMCG00012308 mRNA upstream 74739 15684507 ~ 15689290 (+) False AMCG00012308
AMCG00012309 mRNA upstream 84766 15643156 ~ 15679263 (+) True AMCG00012309
AMCG00012307 mRNA upstream 233650 15523512 ~ 15530379 (+) True AMCG00012307
AMCG00012302 mRNA upstream 289503 15471051 ~ 15474526 (+) False AMCG00012302
AMCG00012306 mRNA upstream 333142 15430288 ~ 15430887 (+) True AMCG00012306
AMCG00012313 mRNA downstream 72984 15888698 ~ 15896509 (+) True AMCG00012313
AMCG00012316 mRNA downstream 125918 15941632 ~ 15984389 (+) True AMCG00012316
AMCG00012317 mRNA downstream 171345 15987059 ~ 16057103 (+) True AMCG00012317
AMCG00012321 mRNA downstream 242139 16057853 ~ 16100861 (+) True AMCG00012321
AMCG00012324 mRNA downstream 289191 16104905 ~ 16142641 (+) False AMCG00012324
TU170455 other upstream 140148 15119725 ~ 15623881 (+) True G135670
TU170550 other upstream 200193 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 284480 15452069 ~ 15479549 (+) True AMCG00012302
TU170424 other upstream 754226 14988298 ~ 15009803 (+) True G135649
TU170413 other upstream 1051388 14710244 ~ 14712641 (+) False AMCG00012294
TU170595 other downstream 95534 15911248 ~ 15930848 (+) True G135781
TU170961 other downstream 360685 16176399 ~ 16182668 (+) False AMCG00012318
TU171007 other downstream 434534 16250248 ~ 16259332 (+) True G136076
TU171045 other downstream 577985 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 828043 16643757 ~ 16648562 (+) True AMCG00012348

Expression Profile