RNA id: AMCG00012313


Basic Information

Item Value
RNA id AMCG00012313
length 1533
RNA type mRNA
GC content 0.61
exon number 7
gene id AMCG00012313
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15888698 ~ 15896509 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTCTCCAGGTGAGGGTGAATAGCAGCAGCCTCTGCGCTGGGAGAGTGGAGGTGCTGTTCGAGGGCCAGTGGGGTCATGTGTGCAGCCACTCCTGGGACCTGCGCGATGCAGAGGTGCTCTGTCAACAGCTGGGCTGTGGGGCGGCAGTGTCGGCACCCCATCTTCTCCGCTCCCAGAATGCCTCTGAGTACAGGGTGCTGAGCAGAGTGCACTGCCTGGGCAACGAGACGGAGCTGGGACAGTGCAGGGCCGGGCCCCTGGGGGTCAAGGACAGCCAACACCTGTGGGATGCAGCTGTCATCTGTGCAGaaagaaaactagATATAGTGACAATACTGAATGGCTGCTCTGGCCGAGTGGATGTATACAACAGAGGCCAGAGGGGAACAGTGTGCCGCAATGGCTTTGGACTCAACGAAGCCCAGGTAGCCTGCAAACAAGCTGGCTGTGGAGAGGCGCTTACAGTGTGGAAAATGAGAATCCATATAAATGACGTTCCCATCTGGCTGGACCGAGTGCGGTGCTCTGGGAACGAGTCGTCTCTCTGGGAGTGTGCCTCCGATCCCTGGGGCCACCATGCCTGCGATCTCAACATGAACGTTCACATTATGTGTAAAGACCACAGGGAGCCCCGGATCGCAGACGGTGAGGAACCCTGCTCTGGGAGAGTGGAGCTGCAGTTTGGGGACCACGTGGTGTGCAGACAGCTGGGCTGTGGCCAGGCGCTGAAAGCCACAGGCTCAGCTGAGTTCGGGGAGGGCTCCGGGCCCTTCTGGCTGGATGACGTCACTTGCCGTGGAAATGAGACAGCACTGTGGGAATGCCCCAGGGCATCCTGGAAGAGGAGGAACTGTGGACACAAGGAGGATGCTGGGGTGGTCTGTTCTGAGCACAAGGAGCTGCGCCTGGTCAGTGCTGAGTACGACTGTGCTGGGAGACTGGAGGTCCTCTACAATGGCACCTGGGGCAGCGTGTGCTCCAATGGGATGGAGTCCTTCACTGTGGCCTTGGTGTGTCGGCAGCTGCAGTGTGGAGACAGCGGCTCTCTGCAGGACGGGGAGCAGTTTGAAACAGGCTCCGGTCCTAAATGGTTAGATATGGTGAAATGCCGAGGGCACGAGTCTGTCCTGTGGCAGTGCCCTGCTGCACCATGGGGGCGCAATGAGTGCCAGGACCCTGAAGAGGCAGAAATTCGGTGTGCAAGGCCGCAGCTGAGGCTGGTGGGGCTGGATGGGCGGTGCTCGGGCATGGTGGAGGTGTGTCACAGGGGGGTCTGGGGGACGGTGTGCGATGACTCCTGGGATCTCCAGGACGCCCATGTGGTGTGCAGAGAGCTCGGTTGTGGCTCTGCCCTCTCTGCACCCCAGGGAGCTCAATGGGGCGAAGGTAGTGGGACGGTGTGGCTGGATGAGGGGCACGGAGAGGGCTCTGCTGGAGTGCCGCTCCTCCCCCCCGGGGAGTCATGGCTGCACACACAAGGAGGATGCGGCTGTGGTCTGCGCAGGTACAATCTGGACACTGGACATGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170590 lncRNA upstream 9194 15879134 ~ 15879504 (+) True G135779
TU170578 lncRNA upstream 76577 15811913 ~ 15812121 (+) True G135768
TU170448 lncRNA upstream 80177 15166544 ~ 15808521 (+) False AMCG00012309
TU170447 lncRNA upstream 82045 15802429 ~ 15806653 (+) True G135666
TU170557 lncRNA upstream 199360 15684478 ~ 15689338 (+) True AMCG00012308
TU170939 lncRNA downstream 206385 16102894 ~ 16103304 (+) True G136025
TU170940 lncRNA downstream 235322 16131831 ~ 16136715 (+) True AMCG00012324
TU170957 lncRNA downstream 275230 16171739 ~ 16172095 (+) True G136040
TU170969 lncRNA downstream 297466 16193975 ~ 16196114 (+) True G136051
TU171136 lncRNA downstream 641553 16538062 ~ 16539149 (+) True G136177
AMCG00012310 mRNA upstream 72984 15764029 ~ 15815714 (+) True AMCG00012310
AMCG00012308 mRNA upstream 199408 15684507 ~ 15689290 (+) False AMCG00012308
AMCG00012309 mRNA upstream 209435 15643156 ~ 15679263 (+) True AMCG00012309
AMCG00012307 mRNA upstream 358319 15523512 ~ 15530379 (+) True AMCG00012307
AMCG00012302 mRNA upstream 414172 15471051 ~ 15474526 (+) False AMCG00012302
AMCG00012316 mRNA downstream 45123 15941632 ~ 15984389 (+) True AMCG00012316
AMCG00012317 mRNA downstream 90550 15987059 ~ 16057103 (+) True AMCG00012317
AMCG00012321 mRNA downstream 161344 16057853 ~ 16100861 (+) True AMCG00012321
AMCG00012324 mRNA downstream 208396 16104905 ~ 16142641 (+) False AMCG00012324
AMCG00012320 mRNA downstream 246141 16142650 ~ 16155119 (+) True AMCG00012320
TU170455 other upstream 264817 15119725 ~ 15623881 (+) True G135670
TU170550 other upstream 324862 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 409149 15452069 ~ 15479549 (+) True AMCG00012302
TU170424 other upstream 878895 14988298 ~ 15009803 (+) True G135649
TU170413 other upstream 1176057 14710244 ~ 14712641 (+) False AMCG00012294
TU170595 other downstream 14739 15911248 ~ 15930848 (+) True G135781
TU170961 other downstream 279890 16176399 ~ 16182668 (+) False AMCG00012318
TU171007 other downstream 353739 16250248 ~ 16259332 (+) True G136076
TU171045 other downstream 497190 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 747248 16643757 ~ 16648562 (+) True AMCG00012348

Expression Profile