RNA id: AMCG00012317


Basic Information

Item Value
RNA id AMCG00012317
length 1797
RNA type mRNA
GC content 0.53
exon number 15
gene id AMCG00012317
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 15987059 ~ 16057103 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCGTGTGAGGTTGTCTCTGGCCGATGATACCACTGCGATTGAAGCCGTGGCTTTCGACATGGAAAAGGCTCGCTGCCTGAAGAAGGACAAATGGTTCCTTCTGGACAATTACAGGACAAGCAATTTCAGAGATCAGACATCCTTGGTGATAGGGGAGCGTACTGAGTTCTTCCTTGAGACTCGCCTCAAGCCGAGACACAGCTCTCCTGACAGCCGCCAAACCGAGGGTTCACTGAAAGCAGGACAGTCCGGCCCATCCTCCAGGAGTGGGGTCACTAAGCCCAGCACAGCGGCCCAGTCCCACTCTGTCCTCGGTACTGGGGAGAGTCCGGGCGCTGCTGTGGAAGACTTCACAGAGGAGGTGTTGGATGCTTTATACCAGCTGGACCGCACCTCTGAAAGCAGAGAGCAGCCAGGAGCCTCACACAGGGGCCCTCATAAGCGACCACCAGGGAGCAGTGCAGTGAATCTCTCTCAAGCGTTTCCCTGCCCTCAGTGCTCAGTATCCTTCACTGCCCAACTCTTCCTCCACAAGCACATCAAGAGGTCTCACCCTCAAGAGTACCTAACCATGATGAGGTCTGGCTCAGCTCAGCTGGGGAAGACTGAGGCAGAAGTGCAACAGAAGATCCAGGCCAGACTGAAGAAGGTGGAAGAGATCAGACAGGCGGTGGAGCTCAGCAGAAGTCTCTCAGACCTGCGCCCCCCTCCACACACCAAGGACTGGTCTGATGTCACTGTGACCTCTGACGTCTGTGTGGGGGCTGTCAGGAGAGCTGTCTCTCAGCTGGAGGAGAGACTCAGAGAAGAAATGCAAAAATTCTATGGAATTGAGCTGAAGAGGATCCAGCAATATGCAGGTATCTGCTACAAGAaacttaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaaccaTGGCTCAGACAAGAGCACAGCTTAAAACTGCATTTGTCTGCTGTCAGCTGTTACCATGTTTCAGGAGCAAACACTGCATCTGTGCCAAGACAGCTGAGAGACAGCTCTCCTGACAGCCCCCACACAGACGTCAGAGGTCACAGTGACATCAGACCAGTCCTTGGTGTGTGGAGGGGGGCGCAGGTGGTCCCAGGTGATGCCCAGCTCTTGGCCAAACTCCTCTCCATACCACACGAGCAGTTCGCAGCTTGCAATGATGGGTTTGCAGGACTTGTAGAAGATCTGATCACGACTGAACTGGGTGAACTGGGGAAGTGTTGGGTGAAGACATCACAGTTGGGTTCCATTATGAAATTCTTTGTTACTCACCACCCAGGAGTACCCACTCAGTACAGCCTTCTCCTCATTGGAAACCTCCCCCTCATAGGGCCCAAAGCGTACCCCTTTGGGGATCAGCTTGCCGTCGTTAAAGACCCCCAGTCCGGCCCCTGGGATACTGGAGTCCCGCACAGTCAGACCCCGAGGCAGAGTAAGCCGAGCCCTGTGTGTCGATCCCAGTTCGGCTGGGGTGTCTCTAATGTTGTACCCTCCCGTGTAGCAGTTTATCAGCAGGACCTGTTTCTGGAGCCAGTCTTTCATGAGATGCGGTGCAGCTGGTACATAGCATCCAACTCCTCCTCTGTGAAGTGTTCCATAGCTAAGCTGGGCTTAGTGACCCCACTACTGGAGGATGGGACGGACTGCCATGCTTTCTGTGGACCCTACACATGGAatTACCAGAGGAGGCGAGACAACATGAGCAACACGAAGAAGAGAGACTGCGCCAAGAAATGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170591 lncRNA upstream 86438 15879134 ~ 15900621 (+) False G135779
TU170590 lncRNA upstream 107555 15879134 ~ 15879504 (+) True G135779
TU170578 lncRNA upstream 174938 15811913 ~ 15812121 (+) True G135768
TU170447 lncRNA upstream 180406 15802429 ~ 15806653 (+) True G135666
TU170557 lncRNA upstream 297721 15684478 ~ 15689338 (+) True AMCG00012308
TU170939 lncRNA downstream 45791 16102894 ~ 16103304 (+) True G136025
TU170940 lncRNA downstream 74728 16131831 ~ 16136715 (+) True AMCG00012324
TU170957 lncRNA downstream 114636 16171739 ~ 16172095 (+) True G136040
TU170969 lncRNA downstream 136872 16193975 ~ 16196114 (+) True G136051
TU171136 lncRNA downstream 480959 16538062 ~ 16539149 (+) True G136177
AMCG00012316 mRNA upstream 2670 15941632 ~ 15984389 (+) True AMCG00012316
AMCG00012313 mRNA upstream 90550 15888698 ~ 15896509 (+) True AMCG00012313
AMCG00012310 mRNA upstream 171345 15764029 ~ 15815714 (+) True AMCG00012310
AMCG00012308 mRNA upstream 297769 15684507 ~ 15689290 (+) False AMCG00012308
AMCG00012309 mRNA upstream 307796 15643156 ~ 15679263 (+) True AMCG00012309
AMCG00012321 mRNA downstream 750 16057853 ~ 16100861 (+) True AMCG00012321
AMCG00012324 mRNA downstream 47802 16104905 ~ 16142641 (+) False AMCG00012324
AMCG00012320 mRNA downstream 85547 16142650 ~ 16155119 (+) True AMCG00012320
AMCG00012319 mRNA downstream 107165 16164268 ~ 16169716 (+) True AMCG00012319
AMCG00012318 mRNA downstream 119293 16176396 ~ 16183090 (+) True AMCG00012318
TU170595 other upstream 56211 15911248 ~ 15930848 (+) True G135781
TU170455 other upstream 363178 15119725 ~ 15623881 (+) True G135670
TU170550 other upstream 423223 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 507510 15452069 ~ 15479549 (+) True AMCG00012302
TU170424 other upstream 977256 14988298 ~ 15009803 (+) True G135649
TU170961 other downstream 119296 16176399 ~ 16182668 (+) False AMCG00012318
TU171007 other downstream 193145 16250248 ~ 16259332 (+) True G136076
TU171045 other downstream 336596 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 586654 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 617176 16674279 ~ 16697391 (+) False AMCG00012349

Expression Profile