RNA id: AMCG00012318


Basic Information

Item Value
RNA id AMCG00012318
length 3344
RNA type mRNA
GC content 0.42
exon number 3
gene id AMCG00012318
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16176396 ~ 16183090 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACAGAGGGTGAGAGCTGTAAACAAACACGGAGCTCAGCTGCGCGACTCGTACGGGCGCATCGGTGTAGCTTTGTGTTTCAAATTAGTGCATTGGCCGCGTTAGAAACCGGACTCCGCGTCTTTTCTTGCAGACGCGAAAAGAGACGGCTCGTTAAAAGGGGGCTGTTAGTCTAATTGGGGTttacatgcatgtttttgttcgtttgtttaCCTTTTGCCAAATCCGATGAGCACGCCTGCACGAGTGTCTGCGCATTTCTCAGACGTCTGCGTGTGCAAGCACATCCTCCGCGGTTATAGATCCGTGCGCCCgtatgttttaacatttttaataatatagttGTTGATTTTAGTTGCGTTTTAATTGTAGCTATACgttactgtttttttcttcttctccgcGACATCCAGACCACAACAAGGCGGCAGGGTCCCAGCGATGGTGAAGCTGACCAAACCTAAGACATTCCAGGCCTACCTGGACAGCTGCCATCGCCGGTACAGCTGTGTTCACTGCCGCGCTCACTTGGCCAACCACGATGACCTCATCTCCAAGGAGCAGGCCTATGAGTCCAGTCAGAAGTACAAGGAGGGGAAATACATCATAGAGGTGTCTCACATGATCAAGGACAATGGCTGGGACTGAGAACCCCTCGTCTGTCCATTCCCCTCGCTTTCTTCCTCTGTATCCACCTACCTTGCCTGTACCTCTTCCCTTCTCTCCCGTCTGTCCacccattttaaaaaatacttttcttttctctaaGCAGACCGCTGTCACTATCTCTTCGTTCTAGAAGTGTGCTTGTCCATcgtgtccgtctgtctgttcTCTAACATTGTTAAGCGTTTTACTTGTGTGTAAGATCttataaaccttttattttttatctcccgAATGTGAATATATCCCAATAGATGGGCTAGGCACAGGGCTCCTTGTCTGTATTCACAATAGCTGTGGGGCTGCTGTGTGTCAGTTAGCAGGATATAAACAGCAGCAACCATTCCTGTGCCCCCCAAAATTGTGAGTAACCCTGATCCACTCTGTGGTGCTGCAGTGAAACACAGACTGCAATGAGGGAACTGGGCTGAACCCACTGAGTCAGAGCTGGGGTGGTATGTAGTTGgaccgggtgtgtgtgtgtgtgtgttgggtctATTCAATAATTTCATAAAGTCAGGTCAGTGTTGTTTTCACCTAAAATAATGTCTGATCAGggttgtgtttaaatgtttgtttgttgtgaatATACAAGAAATCAGGCTTCAAATTGTTAAAGGTGTCACAGCCAGGAAAATGAATTCCAGCTGTACACGAGAGTCTATTATGTAGTAGATGGCTGCAGCATTAATATATGTAACATAACTGCTTTAGTGCCTGGCCTCTGGCTTGTCGAGGGCTCCTGACCTTTCAGGCTTTTGAAAATCTGCCATTGATCCTAAGAGCAGCGGCTGCCTAAGTGAGAGCTGTGACCCGTTCTGTGAGCTTTCTGCTGATATCGCAGTATCTTGCTTAACAACACTGAAGTTCAGGTCCTCAAGGGCCTGAGTGTCTCCTGGCTCTCATTCCTTTTATTGGCTAATTGGGTGATTTTGAGCGATTCCTAGCCTTTCCTGAACTGGGTACCACAGCTCCACATCAGACGGAATCTGCTATGCTGCGTAGATGAGCGGGTGAAATCCCCATGTTTGGTTATATCGTTTTACTATCAaacctgcatgtgtgtgtctctagTATGCACCAGCCCTGGTCCTGTAGGCGCCCAGTGTAGCAggtttacatttcattacattacattacattacattggaCCAGTTCAGCAGACTTCCCTGTATAGATTGTTGATTTAAGGAGACCATGTGACCTGCTGGCATGTGTGTCTGATATACAGTCAGATACAAGATACAGAGCTACAGGAACAATCCTATAATCAAACACTGGGTTAATTAGTATAGAGacattttgttcagaacaacaaCTTTGTTTAAAACCGCATGTGAACAGCCCCTCCATATAGTGTGAGTTTGTGTTGAATGAATCGGTGGACTGCTTGTGGTTGTGAACACGCTGTAGAGCAGCAGTCTCCAGCCGGGCTTCAATTAGGGGCGAAATATTATGCTAATCTGGATTCATTTCGAAAATTAAACCAAAGTTTggataaaatgaaaaccagtCGGCCCTGTCTGGTTTTCTGTGACCTGGCCTGGGGCCTCCTGGTGTACAGTGTATGGGAGTGTATATAAGAGTTGTGTACATAATATAGTTTGGAtttaaagtgtgtatatatgtacagtgtgtatgtgtttctcaTAAGTCTTTGGCAGTGGGCAACTGGAACCTGTTCTCTCTAAACCAGGCAAATTTTCCAGATTATCTCTTTGAAGGAGTATTGCAGATAATCAGCATTATTcgaattttaaattaataataaagttgtGTGAATGAAAACCTTACTCTGGCAGAGCCTGAGCTAGAGAGACAATTAGGTCACaatttgttaattgtttatttgctcaGTATTGCAGCAATTCAAGGCTGTCATAATAACggaggggaaaaagaaaattggCAACTATGTACTGTGAAGAAATTGAAATAAGCAAAAGGGTTCTAGGGGTAAAGCGATTAAGGTGATTTAGGATTGAAGTAACATCATTGTATTAAgtttggatatatatatattatttttattttaaataattccatTATTTGACTTATCAATATCCTCTGCAAATAGTTCAGTATGCTACTCCTCACATCTTTTGACTGTgacctctgtttgtttttcttcgtCTCAGTATGATGTAAGCCCTGTGTTACTGTTTATTGTAGTTATTGAGTCATTAATAAACAGTTGCAGTCCTTTTTAAAGAACAATGTCTTTCAAAGAGTATCAATAAAGTGTGACCAttgagagtgtgtttgtgttgcttgtttcacattatgtatgtaaacaaccttttcagtcagtcagggtcaattgcaatgaactgaaagcagcagACTGACTGCAGATTATCCCACGATTAGTGCGGAGTTCCATACTACACTAGTATGTGATCTTAGTACCAATTTCAACAACTTTTGCTGCTGAAATTAGTCTGCAGCTGCACATTAAAAATGTTCTGCAACAAACCCAAAGGAACAGGAGCTTACCTCTCTAGATAAAGCACGGgactgcttgtgtgtgtgtgtgtgcagggggacATATTTAACACctttttttagatttagttcaatctgaaaaaatacaaaaaatgtgtttttttccacatttaaaaatatttatgctaaatctccattttccatttttttaggtatttaaaaaataagtgaaa

Function

GO:      GO:0044699

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170957 lncRNA upstream 4301 16171739 ~ 16172095 (+) True G136040
TU170940 lncRNA upstream 39681 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 73092 16102894 ~ 16103304 (+) True G136025
TU170591 lncRNA upstream 275775 15879134 ~ 15900621 (+) False G135779
TU170590 lncRNA upstream 296892 15879134 ~ 15879504 (+) True G135779
TU170969 lncRNA downstream 10885 16193975 ~ 16196114 (+) True G136051
TU171136 lncRNA downstream 354972 16538062 ~ 16539149 (+) True G136177
TU171150 lncRNA downstream 382809 16565899 ~ 16566231 (+) True G136191
TU171156 lncRNA downstream 437165 16620255 ~ 16632264 (+) True G136195
TU171166 lncRNA downstream 460667 16643757 ~ 16648562 (+) False AMCG00012348
AMCG00012319 mRNA upstream 6680 16164268 ~ 16169716 (+) True AMCG00012319
AMCG00012320 mRNA upstream 21277 16142650 ~ 16155119 (+) True AMCG00012320
AMCG00012324 mRNA upstream 33755 16104905 ~ 16142641 (+) False AMCG00012324
AMCG00012321 mRNA upstream 75535 16057853 ~ 16100861 (+) True AMCG00012321
AMCG00012317 mRNA upstream 119293 15987059 ~ 16057103 (+) True AMCG00012317
AMCG00012325 mRNA downstream 15913 16199003 ~ 16210644 (+) True AMCG00012325
AMCG00012327 mRNA downstream 29823 16212913 ~ 16226772 (+) True AMCG00012327
AMCG00012326 mRNA downstream 104787 16287877 ~ 16288823 (+) True AMCG00012326
AMCG00012330 mRNA downstream 109181 16292271 ~ 16300821 (+) True AMCG00012330
AMCG00012332 mRNA downstream 124319 16307409 ~ 16316260 (+) True AMCG00012332
TU170595 other upstream 245548 15911248 ~ 15930848 (+) True G135781
TU170455 other upstream 552515 15119725 ~ 15623881 (+) True G135670
TU170550 other upstream 612560 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 696847 15452069 ~ 15479549 (+) True AMCG00012302
TU170424 other upstream 1166593 14988298 ~ 15009803 (+) True G135649
TU171007 other downstream 67158 16250248 ~ 16259332 (+) True G136076
TU171045 other downstream 210609 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 460667 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 491189 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 628616 16811706 ~ 16863593 (+) True G136245

Expression Profile