RNA id: AMCG00012320


Basic Information

Item Value
RNA id AMCG00012320
length 1137
RNA type mRNA
GC content 0.59
exon number 8
gene id AMCG00012320
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16142650 ~ 16155119 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGATTCGAGCGGCAGCGTAGCAGGAGCCGGAGCCGCGGCCTCGAGTAGCGGCACTGCCGGCGCTGGGGGCGCAGCGGCGGGCGGCGGAGCGGCTGGAGCGGCGGGATCCAAGCCGGGCCTGGAGTCGGTCAAGGGGCAGAATTTCGACGTGGGTCCCCGCTACACGGACCTACTGTACATCGGCGAAGGGGCCTACGGGATGGTCTGCTCAGCCTACGATAATGTGAACAAACTGCGTGTGGCCATCAAGAAAATCAGCCCGTTCGAGCACCAGACGTACTGCCAGCGCACGCTGCGGGAGATCAAGATCCTGCTGCGCTTCCGGCACGAGAACATCATCGGCATCAACGACATCCTGCGCGCCCGCCGCATCGACAGCATGAGAGATGTGTATCCTTCCCACATCCTCCCGGCACTGCAGGCAGAGCGCAGAGTGGTCCAGGTCATACTCTGGACTGCGAATACCTACATCGTGCAGGACCTGATGGAGACGGACCTGTACAAGCTGCTGAAGACCCAGCAGCTCAGCAACGACCACATCTGCTACTTCCTGTACCAGATCCTGCGAGGGCTCAAGTACATCCACTCGGCCAACGTGCTGCACAGAGACCTGAAGCCCTCCAACCTGCTCATCAACACCACCTGCGATCTCAAGATCTGTGATTTTGGGCTGGCCAGGATAGCGGACCCGGAGCACGACCACACGGGCTTCCTAACGGAGTATGTGGCGACGCGCTGGTACAGGGCACCCGAGATCATGCTCAATTccaagGGCTACACTAAATCGATTGATATTTGGTCGGTGGGCTGTATCCTGGCAGAGATGCTCTCCAACAGACCCATCTTCCCTGGGAAGCACTACCTGGACCAGCTGAACCACATCCTGGGAATCCTGGGCTCGCCTTCTCAGGAAGATCTGAACTGCATCATCAACCTGAAGGCCAGGAACTACCTGCAGACTCTAGACCTTCTGGACAGGATGTTGACCTTCAACGCCATCAAGAGGATCACTCCCGTGGCCGAGGAGCCGTTCACCTTCAACATGGAGCTGGACGACCTGCCCAAGGAGAAGCTGAAGGAGCTCATCTACGAGGAGACGGCCCGCTTTCAGGCCAACTACCAGggctcctga

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0009790 embryo development biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170940 lncRNA upstream 5935 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 39346 16102894 ~ 16103304 (+) True G136025
TU170591 lncRNA upstream 242029 15879134 ~ 15900621 (+) False G135779
TU170590 lncRNA upstream 263146 15879134 ~ 15879504 (+) True G135779
TU170578 lncRNA upstream 330529 15811913 ~ 15812121 (+) True G135768
TU170957 lncRNA downstream 16620 16171739 ~ 16172095 (+) True G136040
TU170969 lncRNA downstream 38856 16193975 ~ 16196114 (+) True G136051
TU171136 lncRNA downstream 382943 16538062 ~ 16539149 (+) True G136177
TU171150 lncRNA downstream 410780 16565899 ~ 16566231 (+) True G136191
TU171156 lncRNA downstream 465136 16620255 ~ 16632264 (+) True G136195
AMCG00012324 mRNA upstream 9 16104905 ~ 16142641 (+) False AMCG00012324
AMCG00012321 mRNA upstream 41789 16057853 ~ 16100861 (+) True AMCG00012321
AMCG00012317 mRNA upstream 85547 15987059 ~ 16057103 (+) True AMCG00012317
AMCG00012316 mRNA upstream 158261 15941632 ~ 15984389 (+) True AMCG00012316
AMCG00012313 mRNA upstream 246141 15888698 ~ 15896509 (+) True AMCG00012313
AMCG00012319 mRNA downstream 9149 16164268 ~ 16169716 (+) True AMCG00012319
AMCG00012318 mRNA downstream 21277 16176396 ~ 16183090 (+) True AMCG00012318
AMCG00012325 mRNA downstream 43884 16199003 ~ 16210644 (+) True AMCG00012325
AMCG00012327 mRNA downstream 57794 16212913 ~ 16226772 (+) True AMCG00012327
AMCG00012326 mRNA downstream 132758 16287877 ~ 16288823 (+) True AMCG00012326
TU170595 other upstream 211802 15911248 ~ 15930848 (+) True G135781
TU170455 other upstream 518769 15119725 ~ 15623881 (+) True G135670
TU170550 other upstream 578814 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 663101 15452069 ~ 15479549 (+) True AMCG00012302
TU170424 other upstream 1132847 14988298 ~ 15009803 (+) True G135649
TU170961 other downstream 21280 16176399 ~ 16182668 (+) False AMCG00012318
TU171007 other downstream 95129 16250248 ~ 16259332 (+) True G136076
TU171045 other downstream 238580 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 488638 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 519160 16674279 ~ 16697391 (+) False AMCG00012349

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051401 False 2122 mRNA 0.48 9 NC_007114.7 26211974 ~ 26222381 (-)