RNA id: AMCG00012326


Basic Information

Item Value
RNA id AMCG00012326
length 451
RNA type mRNA
GC content 0.66
exon number 2
gene id AMCG00012326
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16287877 ~ 16288823 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATAGCGAGATGGAGGAGGATGTGCCAGAGGAGGAGGGTGAGGGcaaggaggaggagcaggagagagagagggaggaagaggggcaACAAGAGGATGAGGAGGAGTGGGGGATGCCCTGCAGTGACGAGGAGATCGAGGACCCCGCCTCCTGGATGCCCCCTCCCTCGGAGATCAAACGTCTGTATGACCTGCTGGACCAGGGAGGGGTCCTGGAGCTGTGTCTGGTCCCCCTGCCCCGCCGGCCCCCCACACCTGACACACAGTCCTCCACCGACAGAGACAGCGCCGACTccgaggaggagagagagaggagggagagggaggacagggagagagactacaaGGCCGAGCCCTCGGGCCCCGCCCCCACGCCCATTCCCCCCGCCTCCCCCTCGTCACAGAGAGCCGACCCCAAAGACATCTTCTCCCCCCGCCAGCGCCGCTACTGA

Function

GO:

id name namespace
GO:0007420 brain development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170969 lncRNA upstream 91763 16193975 ~ 16196114 (+) True G136051
TU170957 lncRNA upstream 115782 16171739 ~ 16172095 (+) True G136040
TU170940 lncRNA upstream 151162 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 184573 16102894 ~ 16103304 (+) True G136025
TU170591 lncRNA upstream 387256 15879134 ~ 15900621 (+) False G135779
TU171136 lncRNA downstream 249239 16538062 ~ 16539149 (+) True G136177
TU171150 lncRNA downstream 277076 16565899 ~ 16566231 (+) True G136191
TU171156 lncRNA downstream 331432 16620255 ~ 16632264 (+) True G136195
TU171166 lncRNA downstream 354934 16643757 ~ 16648562 (+) False AMCG00012348
TU171207 lncRNA downstream 471030 16759853 ~ 16765108 (+) True AMCG00012351
AMCG00012327 mRNA upstream 61105 16212913 ~ 16226772 (+) True AMCG00012327
AMCG00012325 mRNA upstream 77233 16199003 ~ 16210644 (+) True AMCG00012325
AMCG00012318 mRNA upstream 104787 16176396 ~ 16183090 (+) True AMCG00012318
AMCG00012319 mRNA upstream 118161 16164268 ~ 16169716 (+) True AMCG00012319
AMCG00012320 mRNA upstream 132758 16142650 ~ 16155119 (+) True AMCG00012320
AMCG00012330 mRNA downstream 3448 16292271 ~ 16300821 (+) True AMCG00012330
AMCG00012332 mRNA downstream 18586 16307409 ~ 16316260 (+) True AMCG00012332
AMCG00012331 mRNA downstream 58253 16347076 ~ 16353476 (+) True AMCG00012331
AMCG00012341 mRNA downstream 75688 16364511 ~ 16364896 (+) True AMCG00012341
AMCG00012337 mRNA downstream 78606 16367429 ~ 16378987 (+) True AMCG00012337
TU171007 other upstream 28545 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 105209 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 357029 15911248 ~ 15930848 (+) True G135781
TU170455 other upstream 663996 15119725 ~ 15623881 (+) True G135670
TU171045 other downstream 104876 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 354934 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 385456 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 522883 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 577714 16866537 ~ 16867448 (+) True G136255

Expression Profile