RNA id: AMCG00012330


Basic Information

Item Value
RNA id AMCG00012330
length 2562
RNA type mRNA
GC content 0.57
exon number 14
gene id AMCG00012330
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16292271 ~ 16300821 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACGCTCTAAAATTTGAAAAGAAATTAGAGGCGCAAGGCCTGCCGCCCGTCCCGTCTCTTTTTAACCTTTTAAGCTCCGCACAATAACTTAgttttatgcatatatttataacatgtaCATATAATTTCAGTGCACTCAAATTATTGATGATATAAAAACCGTAACAATCAACCTGGACTTCACATTCAACGACTTCAAAGTGTCTGGACGGGAGAAGGAAAGcgatGGCTCAGcgggtcagtgtgtgtgaggcgGGGGCTCCTCGGCGGCCGCCCCCGACCCGGGTGCGAGTGGCGGTCAGGCTCCGGCCCTACATGAGCGCCATCGCTGCTGCTTCCACCGACGAGGACAAGAGAGACGGGCCCTGTGTGAGGGGCCAGGGGTCCCGCGGCCTGGACATCGTCAACTGGAGGAACTCCACCGAGACCCTGCACTATGAgTTTGATGTGTTCCACGGAGAGCAGAGCTCCCAGCAGGAGGTGTATCTGTCTtcagtcaggcctgtcctgcCTCATGTGCTCTGTGGACAGAACGCCAGTGTCTTCGCATACGGGCCCACGGGCGCAGGCAAGACCCACACAATGCTGGGCAGTGCAGAGCAGCCGGGCGTGATCCCCCGCGCCGTGAGGGACTTGTTCCAGCTGGTGAGGGAGCAGAGGGCACAGCCAGAGAACCAGGACTGGGAGTACAGCATCGGCATGTCATACCTGGAGATCTACAATGAGAAgGTGCTGGACTTGCTGGAGCGGGGGGAGCAGGACCTGCCTATCCGGGAGGACCGGGAGCACAACATCCTGATCCCGGGGCTGCAGCTGACCGGGAAGCTGTACCTGATCGACCTGGCCGGCTCGGAGGACAACCGGCGCACGGGCAATCAGGGCCTGCGTCTGAAGGAGAGCGGCGCCATCAACCGCTCCCTGTTCACCCTCAGCAAGGTGGTGGATGCCCTGAACCACGGCCTGGCCAGGGTGCCCTACAGGGACAGCAAGCTCACACGCCTGCTGCAGGACTCCCTGGGTGGCTCTGCTCACTCGGTGATGATCACGAACATCGCCCCGGAGTACCAGTACTACTTTGACACGCTCACGGCACTCAACTTCGCCGCCAAGTCCAAACAGATCGTCAACAAGCCCTTCATCCGAGAGACGGTGCGCGCTGCTGtgcCGGCACCCAAGAGGCCTCGGGAAGAGCAGGGGACTGCAGTAGCACCACCACCACAGAGTAAGAGAGCGAGGCAGGGGCAGAGTGAGGGCCAGGAGGCGGGGCCGGGGACAGCGCAGACACACAGCCCCAGCGACCCCTCTGTGCTGCAGAGACTGCTGGCTCTGGAGAAGATGCTCATGGGGAccccagagagacagagactgacGCTGCTCAAGACTGTGGCCCAGTCCCGGAAAGAGATACAGACGGACGAACAGCAGCCCCCCGTCGCCTCCTCCTCCCTGGTGGCCAGACACCCGGGTGTGGGCACAGCCAGCCTGTTCCGCAGAGACCTGCCCCCCCTGCACAGGAAGACGTCCACTGCGGCCCGGCCCCGCAAGCAGCAGGCTGTGGTGCCGCCTCtgcaggtgTCCCAGGTGCAGCCTCTACAGCAGTGTGCGGTGCTGTGTAAACAAAATACCGCTGTCAGCAAGAAAAAGGGCTCTGAGGCGGGCGCGGGGCAGGGCGGTGAGAACAGCCCCGTGGGGGACTGGGAGACGCAGCTGGACGCAGCGCTGCTGCAGAAGTCCCGGCTGCACATCCTGCAGGTCCTCAACACCGGAGACCTGCGGCTGCTCAAGGGCCTGCAGCAGATCGGGGACAAGAAGGCCAAACTCATCCTGGGCTGGAGGGAGATCCACGGCCCCTTCGCCCAGGTGGAAGACTTGCAGAAGATCGAAGGGATTTCAGCCAAACGCTTCACTTCCTTCATTAAGGCGAACATCCTCAGTACAATCGGCCACTGACAAcggactgatacactgactgtgCTGAGGGCTGGCTGTCCCCTGGAgctatagtgtgtgtgtgtgtggtgtgagaGCGTGTATATACAGAGTGTCTGGATGTAAGTGTGTAGAGCAGGCCAGCACAGTATTCTTCAGTACAGTGAGACAATGTTTAcctattatgtgtgtgtgagagagtataTAGTGTTTGTGGGTGGGGTGTATAAGTGAgtacgtatgtgtgtgtgtatgtatgaatcTGTTGTGTATGTGGTTAGCAGTGtgaatgttgtgtttgtgtagcagtgtgggagtgtgtgtgagggcaGGCCACACAGCAGCCCCATTGCACAGCCGTCAAAGTGATGCCCCACGTCCACAGTCCAGATGCCCCGACCACTGCTGCCCCCCAGCGACTGCAGCATCTCGCCTCGGGGCTGTCGGCCTGGGGTCTCTCGTGCTTTGTACATATTTCTCCTTTCtgcaacatttcagttttatatgcCAATAAACTCTTTTTGTGGTGTTATAGCTACATTAGTTTTATTGGTTCTGTTTGCATGGAATGAcacttgatgtattttttttattattgttttagtattttttttaaacttattaaaaggaaa

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0048592 eye morphogenesis biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0007420 brain development biological_process
GO:0001966 thigmotaxis biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005515 protein binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K10403 KIF22; kinesin family member 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170969 lncRNA upstream 96157 16193975 ~ 16196114 (+) True G136051
TU170957 lncRNA upstream 120176 16171739 ~ 16172095 (+) True G136040
TU170940 lncRNA upstream 155556 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 188967 16102894 ~ 16103304 (+) True G136025
TU170591 lncRNA upstream 391650 15879134 ~ 15900621 (+) False G135779
TU171136 lncRNA downstream 237241 16538062 ~ 16539149 (+) True G136177
TU171150 lncRNA downstream 265078 16565899 ~ 16566231 (+) True G136191
TU171156 lncRNA downstream 319434 16620255 ~ 16632264 (+) True G136195
TU171166 lncRNA downstream 342936 16643757 ~ 16648562 (+) False AMCG00012348
TU171207 lncRNA downstream 459032 16759853 ~ 16765108 (+) True AMCG00012351
AMCG00012326 mRNA upstream 3448 16287877 ~ 16288823 (+) True AMCG00012326
AMCG00012327 mRNA upstream 65499 16212913 ~ 16226772 (+) True AMCG00012327
AMCG00012325 mRNA upstream 81627 16199003 ~ 16210644 (+) True AMCG00012325
AMCG00012318 mRNA upstream 109181 16176396 ~ 16183090 (+) True AMCG00012318
AMCG00012319 mRNA upstream 122555 16164268 ~ 16169716 (+) True AMCG00012319
AMCG00012332 mRNA downstream 6588 16307409 ~ 16316260 (+) True AMCG00012332
AMCG00012331 mRNA downstream 46255 16347076 ~ 16353476 (+) True AMCG00012331
AMCG00012341 mRNA downstream 63690 16364511 ~ 16364896 (+) True AMCG00012341
AMCG00012337 mRNA downstream 66608 16367429 ~ 16378987 (+) True AMCG00012337
AMCG00012336 mRNA downstream 99669 16400490 ~ 16402197 (+) True AMCG00012336
TU171007 other upstream 32939 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 109603 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 361423 15911248 ~ 15930848 (+) True G135781
TU170550 other upstream 728435 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 812722 15452069 ~ 15479549 (+) True AMCG00012302
TU171045 other downstream 92878 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 342936 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 373458 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 510885 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 565716 16866537 ~ 16867448 (+) True G136255

Expression Profile