RNA id: AMCG00012331



Basic Information


Item Value
RNA id AMCG00012331
length 828
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00012331
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16347076 ~ 16353476 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGTGACATGAAGTGGCTGATTTCCATCACGGTGTACCTGTTGGCAGCTGATGGTGTTTCAAACTcttctttcactctctctctctttctgattACAGAGCTGGGCCGCTCCACAGCATTTAACCTGGAGACAGAGAACTTCACAAAGTTTGATGGCGACAGTGAATGGTTCGGATACAATGTAAGACAGATGGACagtggaaatggaaaatgGGTCATTGTCAGTGCTCCTCTGCAAGGAAACGGAAGCCTCTTCAGATGTTCCTACAACTCTTCGTCTTGTTCCCGCATTACTGTGCCAGGTATACGGTGTTCTTGGATGTGTCAGTGGAAATTGGGGTTGAGTTTGCCGAGTCCACCACAaagtgcAGTAGGTCCCTGGTCAATGGGTCTGGCATTGACTACTAATCCATCCACCCAAGAGCTTGTGGTGTGTGGGCCCAGGTTGCAACATCCCTGTGGGAAGAACACATACTTGAATGGCATTTGTTTCAAACTAAACAGGACCTTCATGCCTCTGCCTGGAAACTACTCTCCTGGGTACCAAGAGTGCCCCCCTAAGAACATCGACATCGTGTTCCTGATTGACGGCTCGGGCAGCATAAGTTCAGGCGATTTCAGCAAGATGAAGACCTTCATGATACAAATCATCAAGAACTTCCACCAGAAAAGAGCCAACTTTGCGGTGGTTCAGTTTTCCTCTTATACAGAGGTGGAGTTTAACTTCAACACTTACCTGGCAACCAGCAATATAGAAATCCTCATTAACAATATAGTACAGAAACAACAATTTACATATACAGCAAAAGCCATTCAGTTTGTGGCGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU170969 lncRNA upstream 150962 16193975 ~ 16196114 (+) True G136051
TU170957 lncRNA upstream 174981 16171739 ~ 16172095 (+) True G136040
TU170940 lncRNA upstream 210361 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 243772 16102894 ~ 16103304 (+) True G136025
TU170591 lncRNA upstream 446455 15879134 ~ 15900621 (+) False G135779
TU171136 lncRNA downstream 184586 16538062 ~ 16539149 (+) True G136177
TU171150 lncRNA downstream 212423 16565899 ~ 16566231 (+) True G136191
TU171156 lncRNA downstream 266779 16620255 ~ 16632264 (+) True G136195
TU171166 lncRNA downstream 290281 16643757 ~ 16648562 (+) False AMCG00012348
TU171207 lncRNA downstream 406377 16759853 ~ 16765108 (+) True AMCG00012351
AMCG00012332 mRNA upstream 30816 16307409 ~ 16316260 (+) True AMCG00012332
AMCG00012330 mRNA upstream 46255 16292271 ~ 16300821 (+) True AMCG00012330
AMCG00012326 mRNA upstream 58253 16287877 ~ 16288823 (+) True AMCG00012326
AMCG00012327 mRNA upstream 120304 16212913 ~ 16226772 (+) True AMCG00012327
AMCG00012325 mRNA upstream 136432 16199003 ~ 16210644 (+) True AMCG00012325
AMCG00012341 mRNA downstream 11035 16364511 ~ 16364896 (+) True AMCG00012341
AMCG00012337 mRNA downstream 13953 16367429 ~ 16378987 (+) True AMCG00012337
AMCG00012336 mRNA downstream 47014 16400490 ~ 16402197 (+) True AMCG00012336
AMCG00012338 mRNA downstream 78197 16431673 ~ 16432087 (+) False AMCG00012338
AMCG00012342 mRNA downstream 160383 16513859 ~ 16517621 (+) True AMCG00012342
TU171007 other upstream 87744 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 164408 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 416228 15911248 ~ 15930848 (+) True G135781
TU170550 other upstream 783240 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 867527 15452069 ~ 15479549 (+) True AMCG00012302
TU171045 other downstream 40223 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 290281 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 320803 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 458230 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 513061 16866537 ~ 16867448 (+) True G136255

Expression Profile