RNA id: AMCG00012333


Basic Information

Item Value
RNA id AMCG00012333
length 3198
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00012333
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16327201 ~ 16333505 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTACGTTGTTCGTAAGTGTGTGTTTCGACTGGTATGTTGCAGCTGTCTGCTGCCGGGCCCGGGCCGATCCGCATCGCACTGACACTACTGGGGATCCCCTACGGGCTGTGCTCGGCGAGTAAAGGtgcTCCCAGTTGTCCCTTAGTAAAAGCCACCCTTTCTCTTGCCCAGTCTGCGCACACTGGTCCTCCGTTTGTCTGTCGTTCCGGTCTGCACACGATGTCTCCCCCTTCTCTACCTCCCCATGTGAAGGCCAGGTGCGCTCTGTATccggggtcagaggtcaagcGCCTGCCCGTGCCCGATGAGAGAGTGAGCTGGGAGAGCAGTTGGCCGGAGTACAGCCCCCCCACCTACACAGCCCCCGCCGTCCTCAAACAACCCGTCTGGGCCGACCCGGACATTGGgtggCGGAGGGATAGTTCGGGGGAGAAGGTGGTGAGCCCCCGCTCGGGGCTGCCGGTGCTGCAGTTCGTCTCCATCAAGCGCAAGGACTGTGGAGAGTGGGCCATCCCCGGGGGCATGGTGGACGCCGGAGAGCTCGTGTCTCTCACTCTGCAGAGGGAGTTTTCCGAGGAGGCGCTCAACTCCCTGGACACGCCCCCCCAGGAGCGAGAGAGGCTCAGCCAGCGGATCACAGAGCTCTTCACCAACCCCAGCCTGCAGATATATAAGGGCTATGTTGACGACCCTAGAAACACAGATAACGCCTGGATGGAAACAGTCGCGGTCAACTTCCACGATGACACAGGGAACAGTGTGAGTGAACTCCCCCTCCAAGCAGGGGACGACGCCGGGCAGGTGAGCTGGGTGGATGTGGACTCTGCCCTCCAGCTATACGCCAGCCACGCCCTCTTCCTGGAGAGCACGGCCCGGCAGCACCACGCCCACTGGGCCTGAGACCCACCTGACCCACCCTGCCGATCCATCCCGTCTTTCATCCCACCAGACTGGGTGACATTGTCCATCTGACCTGATGTCATCTCAGCCATAAATGTTGCTAATGTCTTTATCCAGTATATCCCCTTTAATCTCAACTTGGGCTACACCAAAACATACAGATTATAGGAggtaaaataaagcatttaagttaaattaattgttttctctcAGTATGTTTTGCAAAACTTTATACTGAACAACAACACCAAGTTTATATTcaatattcttttaaaaaagaGATGACAACTGCCAGCTTTCATGAATCGTCACATTTACAGGTCAAACAGACTAGAAATACGATATCTCTACGGAatctgtttcatttatttatttatttgtgtattcatTCAATGACTCGTTGACTCAGGTACAGATCagtaaattaaatcactttGTGAACTCAAACCTTATAACTCAAACTGTCGGCTCCACCAAACCAAAGTTACGACAGCAGGAAAGTAGATATGAAAGCTTTCCTGTGACCAAATCCAAAGAATTAAAGACCTGTAAAATATCCCGGCAGCAAAACAAGGTTGAAGAATGCCCATTTTCCCTACATTGGTAGGAGAAGGGGAGTGGTATCACAAATATATCACAAATTTGGAAATAAGCATTAAAACCTAAACATAAGAAGTTAACAATTCTAATAGTTGCAAAAGCCCATGTTAAATTCTGAAGGCGTTTCCTTAACATCTTATATCAATGAAGTACACAAAACAATAAGTAacagtagaaaaataaacataggaaaaataaaatgggattaAACACTGTAACATAATTTTGTTGCTGGTAAaaacatctatatataaattaaaacaatacatagaaCATGCTTGTAACTGTATATAAGTGTGATAGTAAGTGAATCattacagtaaaatgaaaaccaaatagAACTAATACATtggttgtacatttttttaattttattatacaaaacaaatcagctgCATCCAATTGTGTAGCAACGTGGTCATTAACAACAACTTGCAGTATGATATGATTCAAGTTTAATAAGATTATGTGTGAAGTAGGTCAGGATAGCTTTCCAATATTTGCGCTTTGTACAGTTTGGCTAATAAGgtatatcaaattatatttatttgtggttaaacatatttttcacgCTCTTCCAAGGCTTTGGATAAGTCTTAGACGAATACAACACACCAGCAAGATCTATGATAACATAAAcgaacacattattttattttaaatcaggtttcaatattattttctaaatattactTATTTCTATAAGTATTTATTCTGACTACTAGTGATGTAGGGAATGTGGAAAAGTAATAGGTGGAACTGAGAGAAAAACACTAAAGATTGATGGAATCTCTGGCTTTCTaattattgcttattttttggCTGGTTTTCACCCcctgtaaaagtaaaaaatatcaGGTGCCGATTGGTGACcaagccttttttatttatctcaCCATTGCCCCTTTCATTTGGCTTTGGCTGGAAGGAGAGGTTTTGTTTAGTAGGACGAATTGGAAGTTTTGAATTTTTAACCtgctgccttttgtttttgcagtaagtgttttgatttggtccccTGTGTCAGGTATCTTATTTTCTGTGTCCTTaggtttatatttataactaTATAACGTGATGTGTTGATTATACTATTATTTGACAAATCAATTGAATTCATGTAGCTTGATTGATACTTTGAGGTTTGAGATTTAAAGCCAAGTGAGATTGCCATTCAGCTtcttccattcatatttgtccATAATTGTTCCTGGTAATTGGAAGTTAGTTTTTTCCAAATTATCTTTAAGAACTGTTAGAACAACCTAATCACTGGATAGCAGTATTTATAGCATAATTTGTAAACAACACAAGGGCTTACCTTTAAGAAATGCTCGATTCATTTGTGCTTTGCTTTAACATGATCTTTAAGAGTTAAGAGTCcaaatcatgcattttgttGATGTCAGAGCTTCTCCAACATGGTAATATCGAGAATACACAATACAATTCTTTGAACTACCTCAAGTCTTGGCGAAAGCATAATTGAAAATTCTGTGTTCCTCATGCTGTAATGTCACTGCAGACACAGAAGATGGTTGACATTGTAGTCCAGATGCaaagatgaaagaaaaacaacagagaattacagtaaacaaataaaaaaaataaagcaatatatatttcaattaataactTCACTAATAGGTGTCAAGTTTGTCTGCATTGGTTGACATCCAATCTTTACATCCACAATT

Function

GO: NA

KEGG:

id description
K13988 NUDT9; ADP-ribose pyrophosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171058 lncRNA downstream 35743 16282449 ~ 16291458 (-) True G136112
TU170991 lncRNA downstream 110130 16215401 ~ 16217071 (-) True G136066
TU170958 lncRNA downstream 155113 16171759 ~ 16172088 (-) True G136041
TU170945 lncRNA downstream 166003 16127696 ~ 16161198 (-) True G136029
TU170938 lncRNA downstream 226111 16100809 ~ 16101090 (-) True G136024
TU171128 lncRNA upstream 186381 16519886 ~ 16522448 (-) True G136172
TU171134 lncRNA upstream 193012 16526517 ~ 16537271 (-) False G136175
TU171132 lncRNA upstream 197361 16530866 ~ 16537271 (-) True G136175
TU171145 lncRNA upstream 218525 16552030 ~ 16552281 (-) True G136186
TU171164 lncRNA upstream 308858 16642363 ~ 16642613 (-) True G136203
AMCG00012334 mRNA downstream 4601 16318635 ~ 16322600 (-) True AMCG00012334
AMCG00012329 mRNA downstream 71723 16255275 ~ 16255478 (-) True AMCG00012329
AMCG00012328 mRNA downstream 139691 16184399 ~ 16187510 (-) True AMCG00012328
AMCG00012322 mRNA downstream 272983 16049454 ~ 16054218 (-) True AMCG00012322
AMCG00012323 mRNA downstream 321970 15993763 ~ 16005231 (-) True AMCG00012323
AMCG00012335 mRNA upstream 22005 16355510 ~ 16361869 (-) True AMCG00012335
AMCG00012340 mRNA upstream 81602 16415107 ~ 16432050 (-) True AMCG00012340
AMCG00012339 mRNA upstream 103291 16436796 ~ 16440071 (-) True AMCG00012339
AMCG00012345 mRNA upstream 112894 16446399 ~ 16476202 (-) True AMCG00012345
AMCG00012346 mRNA upstream 148445 16481950 ~ 16494681 (-) True AMCG00012346
TU171073 other downstream 12808 16312721 ~ 16314393 (-) True G136125
TU170997 other downstream 99958 16220126 ~ 16227243 (-) True G136070
TU170896 other downstream 402048 15921604 ~ 15925153 (-) True G135988
TU170840 other downstream 595067 15706934 ~ 15732134 (-) False G135957
TU170710 other downstream 1533043 14725510 ~ 14794158 (-) True G135857
TU171089 other upstream 84687 16418192 ~ 16423900 (-) False AMCG00012340
TU171094 other upstream 97847 16431352 ~ 16432813 (-) False AMCG00012340
TU171187 other upstream 365137 16698642 ~ 16699110 (-) True G136222
TU171188 other upstream 365970 16699475 ~ 16699791 (-) True G136223
TU171387 other upstream 759994 17093499 ~ 17133907 (-) True G136378

Expression Profile