RNA id: AMCG00012336


Basic Information

Item Value
RNA id AMCG00012336
length 399
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00012336
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16400490 ~ 16402197 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACATGCGGACCCAGATTGGAACACGAGTGTGGAAAGAATATGTACCTCAATGGTGTCTGTTTCAAACTGGACCGCAACTTCGCTGCCTCATCTGGGAACTACACTCCCGGGTACCAAGAGTGTCCCTTTCAGGACATTGACATTGTGTTCCTGATTGACGGCTCGGGCAGTGTAGCTGGTAATGATTTCGCCAGGATGAAGACCTTCATGATCGAGATCATCAGGAAGTTCAGCCAGAGGGGAGCCAACtttgctGTGGTTCAATATTCCTACTCCGCGCGAACGGAGTTTGACTTTAGTCAGTACATATCGACCCCCGATAAAGAAGGCGTTATCaaccaaatatttcaaagaGGAGGAGGGACCAAGACTGCAGCGGGGATCCTCTATGTGGCGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170969 lncRNA upstream 204376 16193975 ~ 16196114 (+) True G136051
TU170957 lncRNA upstream 228395 16171739 ~ 16172095 (+) True G136040
TU170940 lncRNA upstream 263775 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 297186 16102894 ~ 16103304 (+) True G136025
TU170591 lncRNA upstream 499869 15879134 ~ 15900621 (+) False G135779
TU171136 lncRNA downstream 135865 16538062 ~ 16539149 (+) True G136177
TU171150 lncRNA downstream 163702 16565899 ~ 16566231 (+) True G136191
TU171156 lncRNA downstream 218058 16620255 ~ 16632264 (+) True G136195
TU171166 lncRNA downstream 241560 16643757 ~ 16648562 (+) False AMCG00012348
TU171207 lncRNA downstream 357656 16759853 ~ 16765108 (+) True AMCG00012351
AMCG00012337 mRNA upstream 21503 16367429 ~ 16378987 (+) True AMCG00012337
AMCG00012341 mRNA upstream 35594 16364511 ~ 16364896 (+) True AMCG00012341
AMCG00012331 mRNA upstream 47014 16347076 ~ 16353476 (+) True AMCG00012331
AMCG00012332 mRNA upstream 84230 16307409 ~ 16316260 (+) True AMCG00012332
AMCG00012330 mRNA upstream 99669 16292271 ~ 16300821 (+) True AMCG00012330
AMCG00012338 mRNA downstream 29476 16431673 ~ 16432087 (+) False AMCG00012338
AMCG00012342 mRNA downstream 111662 16513859 ~ 16517621 (+) True AMCG00012342
AMCG00012343 mRNA downstream 128556 16530753 ~ 16537245 (+) True AMCG00012343
AMCG00012348 mRNA downstream 158452 16560649 ~ 16647362 (+) False AMCG00012348
AMCG00012347 mRNA downstream 248136 16650333 ~ 16670699 (+) True AMCG00012347
TU171007 other upstream 141158 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 217822 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 469642 15911248 ~ 15930848 (+) True G135781
TU170550 other upstream 836654 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 920941 15452069 ~ 15479549 (+) True AMCG00012302
TU171165 other downstream 241560 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 272082 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 409509 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 464340 16866537 ~ 16867448 (+) True G136255
TU171236 other downstream 469641 16871838 ~ 16875600 (+) True G136258

Expression Profile