RNA id: AMCG00012337


Basic Information

Item Value
RNA id AMCG00012337
length 1987
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00012337
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16367429 ~ 16378987 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gGTATCTGAGGTGCAGGTCGGTATCTCTCCAGTGCTGAACCTGAATGTGTCCATCGAGAACGCCGGAGAGGATTCCTACAACACCCGCATCATCTTTACCTTCCCTAACGCCCTGTCCTACCGCCGATCCACCCTGCTGCAGTGGGACAGGGTggccacagtgcagtgtgatgtCACAGGCAGCAACTGCCTCATCAACAGGCCCATCTTCAAGAGCCAGGCCAAGGTTTTGTTTATCACCACATTTGATGTTGATGCCAGCAGTAAGCTGGACAGAGTGGTTACCTTGTCTGCTAATGCCACCAGGGCTGATGAATCTACCAACTATATCAATTTCACAGCGGGGCGCAATGATCTTCAAAAGCCTGTCTCTCACATACTCCAGGTCCTGAATCTGGGAATTAGGTACATCCCAGTGAACGTGACCATTCGAGTGCCAGTGAAGCTGGGAAACACGGATATCTGGAGCAACTCCTCAGGATTAAAGGACtgcagtgtggcagtgtgtaAAGTATTTTCCTGTACGATTTCTACCCTATCCTCTCCCATCATCACCTACAATCTCACTGGTGAGGTCAGCTCAGCCTGGATACAGCAGCAGTATATCCACATCTTCACAACGGCCCAAGATCGCTACATCAACACTGAGGTGGAAACCCGGGTGAATGTCTATGTAGAGTACGACTACAAGAAGGAAATCATTGGGGGAGTGGTGGGGGGGCTGGTGCTGCTGGCCCTCATCACACTGGGACTGTACAAGGCTGGCTTCTTCAAGAGAGGATACAAAGAGCTGCTGAAGGAGGCCAAAACAGAGGGGCAGAATGCCACACCTGGGGAGGAGAGTGCCCTCCCTGTGCAGGAGTAGAGTCTGAAACAAGGATGACACAACCGCTGACTTGGCAATACCCTGTGGGGgataaatatagaaatcctatcctgcctttgtccttggtgtgctgttactcctaacttcgttatcagcagctcacactCCTTTCTTTcaacgtattatctgcaaattacattCCCATGCAACTGGCAAttcagaggttaatgattattattcatgagtaatgattataatattgatgagatgggaaggcttagtttagaatgctaatcaaatcactgctatagttaTACCCACCctagtgtttgtattttatcagtTGCTACAAATTGTATCATGACAGAAGTGTTCctttattgcacttttaatacaaatatattgacaTTTCTCAATGTTCTACATGATCATATGAAATTAAAcggttttcttttgtgtttaagACTTCGGCATATAATTAGCAATTAGCACACAAAGGGCATATGCCATATATTAAAGCTTTAACTTGAAATAATATCAGATGTATTTAAAAGGAGATATATTTAGCAATTAGCCAGTACCATTTATGTTTAGttgaaaaatgtgtattctCCTGTTCAGTTACTCAACACACATGTAAAGCTGGCATCCTGAAACAGCAGCCTTATTCTAAACTGCCACCTGGAAACTATGAATGCATAGAAAGCAAATACCCTTAGCTTCTGCAATTCACAAAGAATAAATCaatctttaaatacatatttttgttgttctctgTCAAACAGACATTCAAGTACTTTTCTGAAAAGGGGATTTGCAATTACATTCCCACTTGCTCTCTAGCTTTCAAAGGTTTAGACGATATCCATAGGGTGACAGCTTTGCCACCTTTGCAAACTGAAACGTCTTCACAAAAATCTGAGTTTGTTAACAGAACCAAGTTGTGTCCTAATTAGGTGGGTGTGCCCTTCGGCCTCCAATGCAACACTCCTATAATGCCTAAAGGTTTAAAAGGTGCTCAATGTGTACATATGCAAGATTCTTCACAGGGTTTATCCCTTTTCATCCCTAAGCATGCAATTTCTTGGTTCTTGCCATTCACATGTAATACTTATTGAAAATACTTATTGAatatatgttaaatacataATCTGCTGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170969 lncRNA upstream 171315 16193975 ~ 16196114 (+) True G136051
TU170957 lncRNA upstream 195334 16171739 ~ 16172095 (+) True G136040
TU170940 lncRNA upstream 230714 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 264125 16102894 ~ 16103304 (+) True G136025
TU170591 lncRNA upstream 466808 15879134 ~ 15900621 (+) False G135779
TU171136 lncRNA downstream 159075 16538062 ~ 16539149 (+) True G136177
TU171150 lncRNA downstream 186912 16565899 ~ 16566231 (+) True G136191
TU171156 lncRNA downstream 241268 16620255 ~ 16632264 (+) True G136195
TU171166 lncRNA downstream 264770 16643757 ~ 16648562 (+) False AMCG00012348
TU171207 lncRNA downstream 380866 16759853 ~ 16765108 (+) True AMCG00012351
AMCG00012341 mRNA upstream 2533 16364511 ~ 16364896 (+) True AMCG00012341
AMCG00012331 mRNA upstream 13953 16347076 ~ 16353476 (+) True AMCG00012331
AMCG00012332 mRNA upstream 51169 16307409 ~ 16316260 (+) True AMCG00012332
AMCG00012330 mRNA upstream 66608 16292271 ~ 16300821 (+) True AMCG00012330
AMCG00012326 mRNA upstream 78606 16287877 ~ 16288823 (+) True AMCG00012326
AMCG00012336 mRNA downstream 21503 16400490 ~ 16402197 (+) True AMCG00012336
AMCG00012338 mRNA downstream 52686 16431673 ~ 16432087 (+) False AMCG00012338
AMCG00012342 mRNA downstream 134872 16513859 ~ 16517621 (+) True AMCG00012342
AMCG00012343 mRNA downstream 151766 16530753 ~ 16537245 (+) True AMCG00012343
AMCG00012348 mRNA downstream 181662 16560649 ~ 16647362 (+) False AMCG00012348
TU171007 other upstream 108097 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 184761 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 436581 15911248 ~ 15930848 (+) True G135781
TU170550 other upstream 803593 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 887880 15452069 ~ 15479549 (+) True AMCG00012302
TU171045 other downstream 14712 16393699 ~ 16432813 (+) True AMCG00012338
TU171165 other downstream 264770 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 295292 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 432719 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 487550 16866537 ~ 16867448 (+) True G136255

Expression Profile