RNA id: AMCG00012338


Basic Information

Item Value
RNA id AMCG00012338
length 318
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00012338
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16393699 ~ 16432813 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

actaCAGGCTGGGGTGTCAGTCCCCGAGGGGCCGGGTACCTGTTTGGCAGCGACGTGGTGGCCCAGTTCAACGCTGCCAATGACATCGACATGATCTGCCGGGCCCACCAGCTGGTCATGGAGGGGTACAAGTGGCATTTCAATGAGACGGTGCTGACTGTGTGGTCTGCGCCCAACTACTGCTACAGGTGTGGGAACGTGGCGGCCATCCTGGAGTTGGACGAGCACCTCCAGAAAGAGTTCATCATCTTCGAGGCGGCGCCGCAGGAGACGCGCGGCATCCCCTCCAAAAAGCCTGTCGCCGACTACTTTCTGTGA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170969 lncRNA upstream 235559 16193975 ~ 16196114 (+) True G136051
TU170957 lncRNA upstream 259578 16171739 ~ 16172095 (+) True G136040
TU170940 lncRNA upstream 294958 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 328369 16102894 ~ 16103304 (+) True G136025
TU170591 lncRNA upstream 531052 15879134 ~ 15900621 (+) False G135779
TU171136 lncRNA downstream 105975 16538062 ~ 16539149 (+) True G136177
TU171150 lncRNA downstream 133812 16565899 ~ 16566231 (+) True G136191
TU171156 lncRNA downstream 188168 16620255 ~ 16632264 (+) True G136195
TU171166 lncRNA downstream 211670 16643757 ~ 16648562 (+) False AMCG00012348
TU171207 lncRNA downstream 327766 16759853 ~ 16765108 (+) True AMCG00012351
AMCG00012336 mRNA upstream 29476 16400490 ~ 16402197 (+) True AMCG00012336
AMCG00012337 mRNA upstream 52686 16367429 ~ 16378987 (+) True AMCG00012337
AMCG00012341 mRNA upstream 66777 16364511 ~ 16364896 (+) True AMCG00012341
AMCG00012331 mRNA upstream 78197 16347076 ~ 16353476 (+) True AMCG00012331
AMCG00012332 mRNA upstream 115413 16307409 ~ 16316260 (+) True AMCG00012332
AMCG00012342 mRNA downstream 81772 16513859 ~ 16517621 (+) True AMCG00012342
AMCG00012343 mRNA downstream 98666 16530753 ~ 16537245 (+) True AMCG00012343
AMCG00012348 mRNA downstream 128562 16560649 ~ 16647362 (+) False AMCG00012348
AMCG00012347 mRNA downstream 218246 16650333 ~ 16670699 (+) True AMCG00012347
AMCG00012349 mRNA downstream 258735 16690822 ~ 16706193 (+) True AMCG00012349
TU171007 other upstream 172341 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 249005 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 500825 15911248 ~ 15930848 (+) True G135781
TU170550 other upstream 867837 15559904 ~ 15563836 (+) True G135744
TU170537 other upstream 952124 15452069 ~ 15479549 (+) True AMCG00012302
TU171165 other downstream 211670 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 242192 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 379619 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 434450 16866537 ~ 16867448 (+) True G136255
TU171236 other downstream 439751 16871838 ~ 16875600 (+) True G136258

Expression Profile