RNA id: TU171089


Basic Information

Item Value
RNA id TU171089
length 1415
RNA type TUCP
GC content 0.42
exon number 6
gene id AMCG00012340
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16415107 ~ 16432813 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcaaacacagtattagtatggtgttcctaataatcctttagctgAGTGTATAACATgggcaaaaaacacaaaccaaattGCCAGCTGTACTCACTCactgtatctctctctgtgggcacacacattcaaactttgaagtgctttaatTGGAACGAAAAACAACAAGTGTTTTCAGTGCTATAATTTGAAAGATTTAGAATTGtttgaaactttattttctCACTCTTTAACTTTCTTGTCTGTATTGGTGAAACACTAAATAAACTGATAATGGTTAGAGatataaataagttatttaactgaaataaacatttattttgtgtgattttccCCCAGTGCTCAATCTTATGTCTTATTTCATATACAATGTCTTTGCtgtttaacaaatgtaaaataacgAACTGACTcgattcagatatttaaagttatatacataGGTTTCCCCTGTTTCCCTCACGGATGAACAGAAATGCTTGTAAGCTGCAGGAATTGAATTAAGTGCATTCAAAAACAATCCCTGTTCCTCATGGCATTTTACAATGTTAAATGGTTAAGGCATGTGTGTCAAACAGTGTGTTGCACTgatatataacaaatacatttgagtgTGTCAGTCCAGTGTGTCTGACAGCGTCTCTTTCCCCAGCGTATCGCTGCCAGTGACTTGCCAGGGACACTACAGTATTGGGGTCAGTCTTTGCATGGCACTATGGACCTCAGTGGAGATGGGATTCCTGAGCTGGCTGTGGGCTCCCAGGGGAAGGTACTGGTGCTCAGGTCCAGACCAGTGATTATGGTTGAGCCCAGTGTGACCTTCAGCCCAGCCATAATCAGGTTGGACACTGACTGCATGAGTAGCAAGAATTTCATTGTAAAGGTCTGCTTTACCAACACCAAGGTCACCAAGGACAATATAGGTGACCTTCAAGTGACCATCAGCTACAACTTCACCCTGGATCGCACTCGGAGTAGATTCCGTGCTTACGTCACTCCTAAAAACCGCCAGATCcaaaacactttcacaatgGGACTGAAAGAGAAGTGTTTTCCTCACAACTTCGTTATTCCTGAATGTCCTGAAGACTCATTGGTGTTTTTGTCCAATGAATTGGAGTTCTCTGTGACTGGTCTGCCTTCCTCTGCATCCAAACTGAAACCCATTCTGGACCCCAGGACTCAGACCAAAAAATTCTACCAGcTGGACTTTGAGAAACAGTGTGGAACTGACAACAAATGTATCGACGAACTTAAAGTCAGCTTCAACTTTTCAGGGGCATCAGAGCTGCAGGTGGGGATCACTCCTGTACTGAACCTGACGGTGTCCATACAGAATAGTGGAGAGAATTCTTACAACACCCACGTCATCCTAACCTATCCCTCCGCCCTGTCCTACCGCAGAGCTACTCTGCTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171058 lncRNA downstream 126734 16282449 ~ 16291458 (-) True G136112
TU170991 lncRNA downstream 201121 16215401 ~ 16217071 (-) True G136066
TU170958 lncRNA downstream 246104 16171759 ~ 16172088 (-) True G136041
TU170945 lncRNA downstream 256994 16127696 ~ 16161198 (-) True G136029
TU170938 lncRNA downstream 317102 16100809 ~ 16101090 (-) True G136024
TU171128 lncRNA upstream 95986 16519886 ~ 16522448 (-) True G136172
TU171134 lncRNA upstream 102617 16526517 ~ 16537271 (-) False G136175
TU171132 lncRNA upstream 106966 16530866 ~ 16537271 (-) True G136175
TU171145 lncRNA upstream 128130 16552030 ~ 16552281 (-) True G136186
TU171164 lncRNA upstream 218463 16642363 ~ 16642613 (-) True G136203
AMCG00012335 mRNA downstream 56323 16355510 ~ 16361869 (-) True AMCG00012335
AMCG00012333 mRNA downstream 84687 16327201 ~ 16333505 (-) True AMCG00012333
AMCG00012334 mRNA downstream 95592 16318635 ~ 16322600 (-) True AMCG00012334
AMCG00012329 mRNA downstream 162714 16255275 ~ 16255478 (-) True AMCG00012329
AMCG00012328 mRNA downstream 230682 16184399 ~ 16187510 (-) True AMCG00012328
AMCG00012339 mRNA upstream 12896 16436796 ~ 16440071 (-) True AMCG00012339
AMCG00012345 mRNA upstream 22499 16446399 ~ 16476202 (-) True AMCG00012345
AMCG00012346 mRNA upstream 58050 16481950 ~ 16494681 (-) True AMCG00012346
AMCG00012344 mRNA upstream 71889 16495789 ~ 16510609 (-) True AMCG00012344
AMCG00012352 mRNA upstream 294862 16718762 ~ 16722047 (-) True AMCG00012352
TU171073 other downstream 103799 16312721 ~ 16314393 (-) True G136125
TU170997 other downstream 190949 16220126 ~ 16227243 (-) True G136070
TU170896 other downstream 493039 15921604 ~ 15925153 (-) True G135988
TU170840 other downstream 686058 15706934 ~ 15732134 (-) False G135957
TU170710 other downstream 1624034 14725510 ~ 14794158 (-) True G135857
TU171094 other upstream 7452 16431352 ~ 16432813 (-) False AMCG00012340
TU171187 other upstream 274742 16698642 ~ 16699110 (-) True G136222
TU171188 other upstream 275575 16699475 ~ 16699791 (-) True G136223
TU171387 other upstream 669599 17093499 ~ 17133907 (-) True G136378
TU171432 other upstream 777874 17201774 ~ 17203233 (-) True G136412

Expression Profile