RNA id: AMCG00012342


Basic Information

Item Value
RNA id AMCG00012342
length 1598
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00012342
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16513859 ~ 16517621 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGCGTGCAGGAGAAACAGGATCCGCGTTTTCACTGGAGATTAAACACGTTTCTGCATCCCTGCACCGAGCTGTCCAGATCGCCTGTTTCAATTATGAATGGCGTTGTTCGTTACAGGCAAATATTGAAATAGCAAAGTTATAGCAATCGTGTACTAAACCATTACgctagtgcagtacagtgctcGGGTTTACAGAGACTGGAGACTCGTTAACCATGCAGTTCATTTAAACAGCCAGACACTTTCTTGTATATGTGTTAAGATTTAATTCAACCACTTCTAAATCGTATTAATACGAACACGGGACTTTGGCAGAGATGTGCATGTGATAACTGACCTCTATTAGAAGTGTACtgTCATGGCAGGgtgaagggagggagagactgaCCACTCAttacagagagaaggagggCAGGAAGAGAATGGCACCCGTGGTTCTCCCTGCCTCTCAGCCGGTGTCTGTGGTGCCAGTGGCAGACCTGGCCCTGCCCCTGCCTGCCATCGTGATGATCGCAGTGTGTGCATACCTGCTGGTCTTACTGGCAGCTCTGTGGTGCCGccagtgtctgaagGCGCAGGGGCTGTGTCCGCTGTGCTGCCAGTGCAGTAAGGGCGCTCTCTGTGGCGACTGTGAGTACTGCATGGCATGCGTCGAGTCCTGTGACTGCAAAGTGCCCTCTGTCAGGGTCTGTCTGGACAACGCCTGCCCCGGCCCCTCCGGCCAGTGCTGCGCAAAGTGGGACTGTGCTTGTACCTGCCAGCCCCCCGAATGTCAGAGTTTCAACTGCTTGTGCTTCGAGATCAAGTTAAGATAGACTTAAGATAGAGCTAAACAACTACACCTGGATATATTACAGacttacatgtatttatattacagaTGTAATGAAAGGGTCATCTAGCTGGTTTATGTGCGGTACatgaaaaagttaaacaaaatgcCTTGTTTTATACTACAGACTGGAAACATATTTCAGCTGAAGTACAATAAATTGTGTCTTtatatatgtaggcctatatatacagtatacattgcTTAAGCTGTGttttaaggcattttcattacAAGACTATTGAACACTAGTGTGTCTTTATTCTCTAATGCAGTTCAAGGAAGCAGAtccaattaaattatacaatattgGAAGTTCGGCATTACAGTCCAATACAAAAGCCTTCGCCAAGTTTGGGCTTTTCAACAAGATGCTTTGAACAGGGGGCACAAAGTGACTTAATTACCATTACATGTGCCAGACATATGGTTTCTAATGGTACAAGGATTTACTGTAACTGTGATACAGCCAAATGGTACAGGAGTTATTGCAAAAATGCACTTGCGGTTATAATTTCTCTGCAAAATACAACTATTTTAGgtaacatttacacatttctgaTAATGAATGATCTTCTGAGTACTCTGGCAGCTGGTATATATAAGTTTAGCATGTAGAATATTTTGATGCTCGTCTTGTCGCTTTTGGTCCCAGTCAGTTCATTGGACTGGGATGGTTTTGTAATgatatgttttatgattgtttttaaatactaaaactatattttttccAGATTAAAACCATTGTTTCTAAGACATTGTTt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170969 lncRNA upstream 317745 16193975 ~ 16196114 (+) True G136051
TU170957 lncRNA upstream 341764 16171739 ~ 16172095 (+) True G136040
TU170940 lncRNA upstream 377144 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 410555 16102894 ~ 16103304 (+) True G136025
TU170591 lncRNA upstream 613238 15879134 ~ 15900621 (+) False G135779
TU171136 lncRNA downstream 20441 16538062 ~ 16539149 (+) True G136177
TU171150 lncRNA downstream 48278 16565899 ~ 16566231 (+) True G136191
TU171156 lncRNA downstream 102634 16620255 ~ 16632264 (+) True G136195
TU171166 lncRNA downstream 126136 16643757 ~ 16648562 (+) False AMCG00012348
TU171207 lncRNA downstream 242232 16759853 ~ 16765108 (+) True AMCG00012351
AMCG00012338 mRNA upstream 81772 16431673 ~ 16432087 (+) False AMCG00012338
AMCG00012336 mRNA upstream 111662 16400490 ~ 16402197 (+) True AMCG00012336
AMCG00012337 mRNA upstream 134872 16367429 ~ 16378987 (+) True AMCG00012337
AMCG00012341 mRNA upstream 148963 16364511 ~ 16364896 (+) True AMCG00012341
AMCG00012331 mRNA upstream 160383 16347076 ~ 16353476 (+) True AMCG00012331
AMCG00012343 mRNA downstream 13132 16530753 ~ 16537245 (+) True AMCG00012343
AMCG00012348 mRNA downstream 43028 16560649 ~ 16647362 (+) False AMCG00012348
AMCG00012347 mRNA downstream 132712 16650333 ~ 16670699 (+) True AMCG00012347
AMCG00012349 mRNA downstream 173201 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012350 mRNA downstream 195725 16713346 ~ 16715975 (+) True AMCG00012350
TU171045 other upstream 81046 16393699 ~ 16432813 (+) True AMCG00012338
TU171007 other upstream 254527 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 331191 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 583011 15911248 ~ 15930848 (+) True G135781
TU170550 other upstream 950023 15559904 ~ 15563836 (+) True G135744
TU171165 other downstream 126136 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 156658 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 294085 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 348916 16866537 ~ 16867448 (+) True G136255
TU171236 other downstream 354217 16871838 ~ 16875600 (+) True G136258

Expression Profile