RNA id: AMCG00012343


Basic Information

Item Value
RNA id AMCG00012343
length 1551
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00012343
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16530753 ~ 16537245 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGCCTCGTCCATTTCCTCTCCGCTCTCGCCCGAGCCGGCCTCTGCGACACGCTGCTAGCCCCGCCCCCGGCGCACAAACCACGCCCCCTCCACACTTCCGGGTTGCGTCGGCTGTCGCAATGCCCGGCCGCGTCACGCAGGCGCAGTTAACTCCCTTCCCGCCGCCTCCGCCTCACTCCATCTCCTGCGCTCGGGTTGCACACAGGGCTCTGCTGCGAGCTGCTACGGTTAACCTGCTTCGTGTGATACGCCGCCCCCGTCAGTTCGTACCTCAAGacaCCATGCCTCACCAGTACCCATTCCTCACTCCGGAGCAGAAGAAGGAGCTGTCTGATATCGCCCAGCGTATCGTCGCTCCTGGAAAGGGCATCCTCGCTGCTGATGAGTCCACAGGCAGCATGGCGAAGAGGCTGCAGAGCATCAACGCGGAGAACACCGACGAGAACCGCCGCTTCTACCGGCAGATCCTGTTCTCCGCCGATGACCGCGTCAAGCCCTGCATCGGGGGCGTGATCTTCTTCCACGAGACGCTCTACCAGAAGGATGACTCGGGCAAGGTCTTCTCCAAGGTCATCAAGGACAAGGACATGGTGGTCGGCATCAAGGTTGACAAGGGTGTTGTTCCTCTGGCCGGGACTAATGGAGAGACCACCACACAAGggcTGGATGGTCTGTATGAGCGCTGTGCCCAGTATAAGAAGGACGGCGCCGACTTCGCCAAGTGGCGCTGCGTGCTGAAGatcacccccaccaccccctcccACCTCGCCATCATCGAGAACGCCAACGTGCTCGCCCGCTACGCCAGCATCTGTCAGATGCACGGCATCGTTCCCATCGTGGAGCCCGAGATCCTGCCCGACGGAGAGCACGACCTGAAACGGTGCCAGTACGTCACAGAGAAGGTTCTGGCCGCCGTCTACAAGGCCCTGTCTGATCACCATGTCTACCTGGAGGGCACCCTGCTCAAGCCCAACATGGTGACCGCTGGACACTCCTGCCCCCAGAAATACTCCCCCCAAGAGATTGCCATGGCAACTGTCACTGCCCTGCGCCGAACCGTGCCCCCCGCTGTGCCAGtCTTCGATGGCATGTTTTCTCTCGCAACTAACAGCAAGGCTTCCGTAGGGAAGTACAGCCCCAGTGGAGACAAGGGAGCTGCAGCTGGAGAATCACTCTTCGTTGCCAACCACGCCTACTGAGAACCCAACCCCTACGACCACACCTCCCTCTGTGACGTCACACCGTAACCCTGCCTCCTGCTACGCTAGTTTGAGGACAGCAGGAAGCACAGGTGTCGTGAGGGAAGAAACGGCAGGACAGCCAACCCCTTTGGCTACGTGGGCATCTGTATTCGTGTGCTTTGGTCAATGTAGATGTAGGATGTACCTTGTGATGTCACATCATGTTCCGTCTTGTGCCTTCTCTCCTTTCGcctcttaaaaaaactaaacaaaacacaaaaaaaatgaataataaaagtCACTGAAAAATAGATATCCACCAGAAACtctgacttttgtttttattgctgttgctGCTTCAGC

Function

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0006096 glycolytic process biological_process
GO:0043473 pigmentation biological_process
GO:0007409 axonogenesis biological_process
GO:0007420 brain development biological_process
GO:0001966 thigmotaxis biological_process
GO:0004332 fructose-bisphosphate aldolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170969 lncRNA upstream 334639 16193975 ~ 16196114 (+) True G136051
TU170957 lncRNA upstream 358658 16171739 ~ 16172095 (+) True G136040
TU170940 lncRNA upstream 394038 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 427449 16102894 ~ 16103304 (+) True G136025
TU170591 lncRNA upstream 630132 15879134 ~ 15900621 (+) False G135779
TU171136 lncRNA downstream 817 16538062 ~ 16539149 (+) True G136177
TU171150 lncRNA downstream 28654 16565899 ~ 16566231 (+) True G136191
TU171156 lncRNA downstream 83010 16620255 ~ 16632264 (+) True G136195
TU171166 lncRNA downstream 106512 16643757 ~ 16648562 (+) False AMCG00012348
TU171207 lncRNA downstream 222608 16759853 ~ 16765108 (+) True AMCG00012351
AMCG00012342 mRNA upstream 13132 16513859 ~ 16517621 (+) True AMCG00012342
AMCG00012338 mRNA upstream 98666 16431673 ~ 16432087 (+) False AMCG00012338
AMCG00012336 mRNA upstream 128556 16400490 ~ 16402197 (+) True AMCG00012336
AMCG00012337 mRNA upstream 151766 16367429 ~ 16378987 (+) True AMCG00012337
AMCG00012341 mRNA upstream 165857 16364511 ~ 16364896 (+) True AMCG00012341
AMCG00012348 mRNA downstream 23404 16560649 ~ 16647362 (+) False AMCG00012348
AMCG00012347 mRNA downstream 113088 16650333 ~ 16670699 (+) True AMCG00012347
AMCG00012349 mRNA downstream 153577 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012350 mRNA downstream 176101 16713346 ~ 16715975 (+) True AMCG00012350
AMCG00012351 mRNA downstream 196181 16733426 ~ 16764790 (+) False AMCG00012351
TU171045 other upstream 97940 16393699 ~ 16432813 (+) True AMCG00012338
TU171007 other upstream 271421 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 348085 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 599905 15911248 ~ 15930848 (+) True G135781
TU170550 other upstream 966917 15559904 ~ 15563836 (+) True G135744
TU171165 other downstream 106512 16643757 ~ 16648562 (+) True AMCG00012348
TU171182 other downstream 137034 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 274461 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 329292 16866537 ~ 16867448 (+) True G136255
TU171236 other downstream 334593 16871838 ~ 16875600 (+) True G136258

Expression Profile