RNA id: AMCG00012348



Basic Information


Item Value
RNA id AMCG00012348
length 1191
RNA type mRNA
GC content 0.59
exon number 5
gene id AMCG00012348
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16560649 ~ 16648562 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCGGGGGCCGCTTCAGCTACTGTAGCTACAAAAGGGGCCAGTTCAGTTGCTGACAGCATGCCTCCCAAGGTGACACCCAGTCCTGCTCCTGTAGCTCCTGCCCCAGCTGCCGCCCCTGCTGTGCCAACCACTGCAGCCCCAATGCCCACCCCCGATGTCAGCAACACTAATCCTCCCACTGCCAGGATCACCTTTGTTAGGAACTCGATGGAATTCTCTGCTTTTTCTGTCGCCTTGTCACAGTATCGGGTGGGCAATCCAGGCCGCCTTCAAGTCCGGGGGGTCACTGACAGCATCCCCATCAGGCCGCAGGTGGTGCGATCCCTCATTCAGACCTTAAAACTCACCTGGGACACAAGGCAGCAAACGCAGACAGGCCTGACTCCAGGCCTGCGGGATCATGCCCTCACCCCCCTCACCCAGCGCATCTGGGAGACGGCGGCCAGGAGCCGAGCGAAGATGCTGTGGACCCTCTGCCACCTGGAGGGGTTTGCGGCCGCAGTGGGCGCCTCCGTGTTGCTCGGCTCCAGGGCCCCTGCAGGCATGAGGGAGGGCAGACTGGCGCTCAGCGGCTCCAGCACCACGGGCAGAGACGCCCTCTTGTCCCCGACATCACTGGGTGCTGTCTGGGCGCTGGCCTGCCGCTCCCTGGCCCCTCTGTGCTCTTGTGGGCCGCCGCTCTCGGGGCTGCGCAGCTCTGGAACGAATTTTGGGGAGGACTTTGACATCAACGTGAATGCTGCTCTGCAAGTGATGGCCACCAACATCATTAGGCTGGCGCCAGAGCACTCAAAGCTCCTCTTCTACCAAAATGAGATGGAGGAAGTAACCAGCGCACTAAATATCGCCAAGGGTGTGGGACTCAACTGCAACGAAGATGTCAACCCACAGCTGTACAGCCTGCAGAAGAAGGGGCGTCTGCAGAAGATTGACGGCAGCCCCCCAAAGTGGTCTCTAAAGCAGAGGGAGCCGACCCAGGAACCACAGACAAGCAATACGCTCCCCAAGTCCTCTGATGTAGACCCATCGCTTGTGCACAGTTTACTGCGAACAGATAGAGGAGAAACGGCCTTCGAAATTCGCAAGAAATCGAAGGCCAAACCCAGAAGTGTGAAAAAGCAGCTGTACGATCTGCTGCCGAGAGGGGATGTGGAGAAGAGTGAGGGCAGCTGTGTGGAAGAGGAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU171136 lncRNA upstream 21500 16538062 ~ 16539149 (+) True G136177
TU170969 lncRNA upstream 364535 16193975 ~ 16196114 (+) True G136051
TU170957 lncRNA upstream 388554 16171739 ~ 16172095 (+) True G136040
TU170940 lncRNA upstream 423934 16131831 ~ 16136715 (+) True AMCG00012324
TU170939 lncRNA upstream 457345 16102894 ~ 16103304 (+) True G136025
TU171207 lncRNA downstream 112491 16759853 ~ 16765108 (+) True AMCG00012351
TU171209 lncRNA downstream 181688 16829050 ~ 16831802 (+) True G136236
TU171211 lncRNA downstream 195205 16842567 ~ 16907105 (+) True G136237
TU171268 lncRNA downstream 264873 16912235 ~ 16914695 (+) True G136286
TU171280 lncRNA downstream 309327 16956689 ~ 16957295 (+) True G136297
AMCG00012343 mRNA upstream 23404 16530753 ~ 16537245 (+) True AMCG00012343
AMCG00012342 mRNA upstream 43028 16513859 ~ 16517621 (+) True AMCG00012342
AMCG00012338 mRNA upstream 128562 16431673 ~ 16432087 (+) False AMCG00012338
AMCG00012336 mRNA upstream 158452 16400490 ~ 16402197 (+) True AMCG00012336
AMCG00012337 mRNA upstream 181662 16367429 ~ 16378987 (+) True AMCG00012337
AMCG00012347 mRNA downstream 2971 16650333 ~ 16670699 (+) True AMCG00012347
AMCG00012349 mRNA downstream 43460 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012350 mRNA downstream 65984 16713346 ~ 16715975 (+) True AMCG00012350
AMCG00012351 mRNA downstream 86064 16733426 ~ 16764790 (+) False AMCG00012351
AMCG00012354 mRNA downstream 165423 16812785 ~ 16818439 (+) True AMCG00012354
TU171045 other upstream 127836 16393699 ~ 16432813 (+) True AMCG00012338
TU171007 other upstream 301317 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 377981 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 629801 15911248 ~ 15930848 (+) True G135781
TU170550 other upstream 996813 15559904 ~ 15563836 (+) True G135744
TU171182 other downstream 26917 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 164344 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 219175 16866537 ~ 16867448 (+) True G136255
TU171236 other downstream 224476 16871838 ~ 16875600 (+) True G136258
TU171279 other downstream 315968 16963330 ~ 17000089 (+) True G136296

Expression Profile