RNA id: TU171165


Basic Information

Item Value
RNA id TU171165
length 3125
RNA type TUCP
GC content 0.41
exon number 3
gene id AMCG00012348
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16560649 ~ 16648562 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCCAAGAGACGGAACCGGAAAGGGGGCGGGAAGTTTTGTATGGTCCAACACCGTCACGGCAAAGGCTACTGAAGAGGACACACACAACCATTGACTGCcacatatacactaccgttcaaaaggttggggtcacttagaaatgtccttgtttgtGATAGAAAGGCAcatttgtccattaaaataacaaactgaTCAGAAAtgcagtgtagacattgttaatgttgtacatgatttgtaatggaatatgtacataggcgtacagaggcccattatcagtaACCATCAGTCGTGGGATCTaatgtgtttgctaatccaagtttatcattttaaaaggctaactgatcattagaaaacccttttgcaattgttagcacagctgaaaagaAGCAAtcaaactggccttctttagactagttgagtatctggagcatccgcaattgtgggttcaattTACAGGCTCAagatggccagaaacaaagaactttcttctgaaactcgtcagtctattcttgttctgagaaatgaaggctattccatgcgaggaattgccaagaaactgaagatctcgtacaacgcagtgtactactcccttcacagaacagcgcagactggctctaaccagaatagagaGAGGAgcgggaggccccggtgcacaactgagcaagaggacaaatacattagagtgtccaGTTTGAGAAAtggacgcctcacaggtcctcaactggcagcttcattaaatagtacccgcaaaacaccggtctcaacgtcaacagtgaagaggcgactccgggatgctggccttctagcaGTCTTGGATTCAGAGCCGGGGACTCAAAAGGCAGAGGCCAAGGTTGAGGCCGGGGAATTAAAAGGCCATGGACAAGGTCAAGGCCGGGGACTCAAAAGGTCGAGGCCGGGGACTCAAAAGGCGGAGGCCAAGGTCGAGGCTGGGAGCCACAAGGCCAAGCTGAGGCCAAGGCCTGGAGCCTTTTAAGGCAAGCTGGTCAAGGTCAATGATAAGAAACTTTTACAGGTAAAGGCCAGAGTCGTGCAGTTTATCATTTGGGTTAGGTGTAGACAGTTGTAATCAGATTTGTACAACTGTAGAAGAGCTCttttccaaaatgaaaagtacagtaaatgtaaaccCTTTACTCCATCAGAGTAGAAATCTCAGCAATTTAAATGATGACCAGGCATTCATTCAGACCCACACTGCTCACAAGATAAACCTGCACTTTACATAGTTTCACACGACTCCCATTCTTGCTCTGGATGCTCACATTTAAGCAATAGTTAGAATGCTTGCATATGttgtagcaaaataaaaaatgaaaatggctaatcagtgcaaaatattgtataaattcCTAACAATACTTTGGATTACTGTaaaaattaataatcataatcaataAGTAATATTTGGCATTCAATTCCCATTTCTCTccttataaaataattgcatttaataattggACAATATTGAATGTGATCAATTATTTGTCTAATATTTTACACgtttaaacaaatattgcattggctttgtattattagattaaTGATATGGCATTTATTATCATGAAATTGAATCGTATGGTGTCTTATTACTCATTAATAGTAGTACTGTAGTTATTGTAATTGTCTTTGCCACTTGCTCTAACTAGCACTAatgttattgtgtattgtaatgtattgtatttaataccttgcaattattttattctgtatgtatattttgaatgtaagtgtaagtcaccctggacaaggtaatctgtttagaaataaataataatcattattagaTTAACGATACTGTTATGAACGAAACAAACCACTCTGTTGCAACTATCGGATTAgatgtatacattataatcGGTGTAGACAACATTAGTCTATCACACCATTTTGCAATGCCGttccataccctgtggacggcgctttATTGGAGCCAATTACCTCCtacagcaggacaatgacccaaagcacagctccaaactattcATTAACTATTTGGGGAAGAAGCACTCAGTcaataatggagtggccagcacagttgccagatctcaaccctattgagctgttgtgggagcagcttgactgtGGTACataagtgcccatcaagccaatccaacttgtgggaggtgcttcaggaagcatggggtgaaatctcttcagattacctcaacaaattgacaactagaatgccaaaggtctgcaaggctgtaattgctgcaaatggaggattctttggcaaaagcaaagtttgaaggacacaattattatttcaattaaaaaaatatatatttctaacctatgattatatttctcattttatcagactcatttcatgtatgtttttatggaaaacaaggacatttctaagtgaccccacacttttgaacggtagtgtatataaacTGAAAAATCTTCACATTCAAGAAAGCTTGACACACCAGTTGAACCAGACCTAGATCCCCAAACAATGTCTTCAGGGAAGAAAGACGTGACCGACGGAAAGGACAAGAGTTTGGAGGAACGGATTATTGCCTTTTTAATACAGATGGAGGAAGTAACCAGCGCACTAAATATCGCCAAGGGTGTGGGACTCAACTGCAACGAAGATGTCAACCCACAGCTGTACAGCCTGCAGAAGAAGGGGCGTCTGCAGAAGATTGACGGCAGCCCCCCAAAGTGGTCTCTAAAGCAGAGGGAGCCGACCCAGGAACCACAGACAAGCAATACGCTCCCCAAGTCCTCTGATGTAGACCCATCGCTTGTGCACAGTTTACTGCGAACAGATAGAGGAGAAACGGCCTTCGAAATTCGCAAGAAATCGAAGGCCAAACCCAGAAGTGTGAAAAAGCAGCTGTACGATCTGCTGCCGAGAGGGGATGTGGAGAAGAGTGAGGGCAGCTGTGTGGAAGAGGAGTGAGAAGAGGTTTCTGCAGGACTATGACTCGAGTCCCTTGGCACAGGGGCTTATGGCTTAAGGCAAGACGAAAACTGGAAGACGTCTTCTTTGCTGTGAAGGTTGTAAAGCTTATGAGGtaaagcaattgtatttttttatatacatctaaTCCACTTTGTAGGATACTTGTACATTTCTGATACTTTACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171156 lncRNA upstream 11493 16620255 ~ 16632264 (+) True G136195
TU171150 lncRNA upstream 77526 16565899 ~ 16566231 (+) True G136191
TU171136 lncRNA upstream 104608 16538062 ~ 16539149 (+) True G136177
TU170969 lncRNA upstream 447643 16193975 ~ 16196114 (+) True G136051
TU170957 lncRNA upstream 471662 16171739 ~ 16172095 (+) True G136040
TU171207 lncRNA downstream 111291 16759853 ~ 16765108 (+) True AMCG00012351
TU171209 lncRNA downstream 180488 16829050 ~ 16831802 (+) True G136236
TU171211 lncRNA downstream 194005 16842567 ~ 16907105 (+) True G136237
TU171268 lncRNA downstream 263673 16912235 ~ 16914695 (+) True G136286
TU171280 lncRNA downstream 308127 16956689 ~ 16957295 (+) True G136297
AMCG00012343 mRNA upstream 106512 16530753 ~ 16537245 (+) True AMCG00012343
AMCG00012342 mRNA upstream 126136 16513859 ~ 16517621 (+) True AMCG00012342
AMCG00012338 mRNA upstream 211670 16431673 ~ 16432087 (+) False AMCG00012338
AMCG00012336 mRNA upstream 241560 16400490 ~ 16402197 (+) True AMCG00012336
AMCG00012337 mRNA upstream 264770 16367429 ~ 16378987 (+) True AMCG00012337
AMCG00012347 mRNA downstream 1771 16650333 ~ 16670699 (+) True AMCG00012347
AMCG00012349 mRNA downstream 42260 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012350 mRNA downstream 64784 16713346 ~ 16715975 (+) True AMCG00012350
AMCG00012351 mRNA downstream 84864 16733426 ~ 16764790 (+) False AMCG00012351
AMCG00012354 mRNA downstream 164223 16812785 ~ 16818439 (+) True AMCG00012354
TU171045 other upstream 210944 16393699 ~ 16432813 (+) True AMCG00012338
TU171007 other upstream 384425 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 461089 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 712909 15911248 ~ 15930848 (+) True G135781
TU170550 other upstream 1079921 15559904 ~ 15563836 (+) True G135744
TU171182 other downstream 25717 16674279 ~ 16697391 (+) False AMCG00012349
TU171221 other downstream 163144 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 217975 16866537 ~ 16867448 (+) True G136255
TU171236 other downstream 223276 16871838 ~ 16875600 (+) True G136258
TU171279 other downstream 314768 16963330 ~ 17000089 (+) True G136296

Expression Profile