RNA id: AMCG00012349


Basic Information

Item Value
RNA id AMCG00012349
length 2025
RNA type mRNA
GC content 0.68
exon number 11
gene id AMCG00012349
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16674279 ~ 16706193 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGAAAAGAGACGTGGCTCTTCCAGGGGGATGGACCGGATGAGTGAGGAGGCCCTGAGGCTGAACCTGTTGAAGAGGGGCCTGGAGCCCCCCGAGGAGCGGGACGAGGCCCTGGCCAAGAGGCTGAAGATGGAGGGCCACGAGGCCATGGAGCGCCTCAAGATGCTGGCCCTGCTCAAGCGCAAGGACCTTGCCGGCATGGAGGccggaggaggaggcggaggcggCTTGGCGGAGGGCAAGGGCGGCCCGGGTGCCGGGATGGCCCTGGGGGCCGGCGCCGGGGGGGTGTATGAGGAGAAGATGAATGGGAGTCTGCGAGGGGGCGGACACGGGGACCCCCGGGGGggaagtggaggaggaggaggaggaggaggaggaggcggcggcggcggcggcggcggcggcggtggTGGCggtggaggaggagcagcaggtGGAGGAGGCGGTGGCAAAACGGGCAAAGAGAACATGGGAGATGAGCCGGTGGACATGAGTGCCCGCAGAggcgatCCCGACCGCGAGCGCCGCACCCCCTCCCCGGACGTCATCGTGCTGTCGGACAACGAGGCGTCCAGTCCCCGCGCCTCGACCCGCATCGAGGAGCGCCTGAGGGCGGCCAACCTGGAGATGTTCAAGgggaaGAGTGGCGAGGAGCGGCAGCAGATGATCAAGGCGCTGCGGGAGGAGCTGcggctggaggaggcccggctGGTGCTGCTCAAGAAGCTCCGCCAGAGCCAGCTGCAGAAGGAGAACCTGGTACAGAAGgtGCCTGTAGTGCAGAACACCCCCTCGGCAGTGCAGCCCTCCCCTGTGCACAGCAGCCAGCAGGGCCTGAACAAGCCCCCCCCGCGGCCCGGCATGCACACCCCCGACGCCCACAACCTCAGGACGGTACAGGGTCACTCTGTGATCAGGTCGGGGGCCAACGCCTCTCTGCCCCAGATGATGATGTCCCAGCGGGTGATCGCACCTAACCCTGCCCAGCTGCAGGGCCAGCGCGGACCTCCCAAGCCTGGCATGGTGCGTTCCAGCTCTGCAGGCATCAACTCCGCCGTCAGCTACCAGCAGgCCTCCAGCCAGCAGGTGGCGGCATCCCAGCGCTCGGCCTCCTCTGCCATCTACATGAACCTGGCGCACATGCAGGCCGGCGGGGTGGGCTCAGTGGGCGGGGTGGGCGCAGTCAGCCCCTCGCCCCTGCCCAGCCCCGGCTCCACCCTCCCCGAGCCGGTCAGCAGCCAGGCGGCCGCCAAGCTGGCCCTGCGCAAGCAGCTGGAGAAGACCCTGCTGGAGATCCCGCCGCCCAAGCCCCCCGCCCCGCTGCTGCACTTCCTGCCCTCGGCCGCCAACAGCGAGTTCATCTACATGGTGGGCCTGGAGGAGGTGGTGCAGAGCGTCATCGACAGCCAGGGTAAGCTGCGGGGGCCCCTGTCCCGCATGGACCCATTCATGTGTGCCCAGTGCAAGACGGACTTCACCCCCCACTGGAAGCAGGAGAAGGGTGGGCGCATCCTGTGCGAACAGTGCATGACATCCAACCAGAAGAAGGCCCTGAAAGCGGAGCACACCAACCGGCTGAAGAACGCCTTCGTCAAGGCCCTGCAGCAGGAGCAGGAGATTGAACAGAGACTGCAGCAGCAGGCCGCGCTCTCCCCCAGCTCGGCCCCCACTGTGCCCAGCGTCAGCAAAGCCGACACTATGATCAGGCACCACGCGCTGAGACAGCGGGGCCTGTCCAGCTCGGCGAGGGGGGTGCTGTCCAACTTTGCCCAGGCCTCCCAGCTCTCGGTAGCGGGCGGCCTGCTGGGCATGGCGGGCAAGCGCAGCAGCGGGAGCAGCCGGGCGCAGCACGAGGGCCGGCGCCAGCTCTACAACATCCCAGGCGTCAACATTGCGTACCTCAGCCCTGGCGGGGTCGGAGGTCACAAGGCGTCCAGTCTGGCTGACCGGCAGCGGGAGTACTTGCTGGACATGATCCCCCCCCGCTCCATATCGCAGTCGATCACCGGCCAGAAATGA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K23194 GATAD2; transcriptional repressor p66

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171166 lncRNA upstream 42260 16643757 ~ 16648562 (+) False AMCG00012348
TU171156 lncRNA upstream 58558 16620255 ~ 16632264 (+) True G136195
TU171150 lncRNA upstream 124591 16565899 ~ 16566231 (+) True G136191
TU171136 lncRNA upstream 151673 16538062 ~ 16539149 (+) True G136177
TU170969 lncRNA upstream 494708 16193975 ~ 16196114 (+) True G136051
TU171207 lncRNA downstream 53660 16759853 ~ 16765108 (+) True AMCG00012351
TU171209 lncRNA downstream 122857 16829050 ~ 16831802 (+) True G136236
TU171211 lncRNA downstream 136374 16842567 ~ 16907105 (+) True G136237
TU171268 lncRNA downstream 206042 16912235 ~ 16914695 (+) True G136286
TU171280 lncRNA downstream 250496 16956689 ~ 16957295 (+) True G136297
AMCG00012347 mRNA upstream 20123 16650333 ~ 16670699 (+) True AMCG00012347
AMCG00012348 mRNA upstream 43460 16560649 ~ 16647362 (+) False AMCG00012348
AMCG00012343 mRNA upstream 153577 16530753 ~ 16537245 (+) True AMCG00012343
AMCG00012342 mRNA upstream 173201 16513859 ~ 16517621 (+) True AMCG00012342
AMCG00012338 mRNA upstream 258735 16431673 ~ 16432087 (+) False AMCG00012338
AMCG00012350 mRNA downstream 7153 16713346 ~ 16715975 (+) True AMCG00012350
AMCG00012351 mRNA downstream 27233 16733426 ~ 16764790 (+) False AMCG00012351
AMCG00012354 mRNA downstream 106592 16812785 ~ 16818439 (+) True AMCG00012354
AMCG00012360 mRNA downstream 171184 16877377 ~ 16900435 (+) True AMCG00012360
AMCG00012366 mRNA downstream 271379 16977572 ~ 16984994 (+) True AMCG00012366
TU171165 other upstream 42260 16643757 ~ 16648562 (+) True AMCG00012348
TU171045 other upstream 258009 16393699 ~ 16432813 (+) True AMCG00012338
TU171007 other upstream 431490 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 508154 16176399 ~ 16182668 (+) False AMCG00012318
TU170595 other upstream 759974 15911248 ~ 15930848 (+) True G135781
TU171221 other downstream 105513 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 160344 16866537 ~ 16867448 (+) True G136255
TU171236 other downstream 165645 16871838 ~ 16875600 (+) True G136258
TU171279 other downstream 257137 16963330 ~ 17000089 (+) True G136296
TU171327 other downstream 419820 17126013 ~ 17129339 (+) True AMCG00012374

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028322 True 2635 mRNA 0.57 10 NC_007130.7 41701660 ~ 41724246 (+)
grasscarp (Ctenopharyngodon idella) CI01000054_02038896_02051427.mRNA True 2041 mRNA 0.60 10 CI01000054 2038707 ~ 2051427 (-)