RNA id: AMCG00012350



Basic Information


Item Value
RNA id AMCG00012350
length 813
RNA type mRNA
GC content 0.59
exon number 6
gene id AMCG00012350
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16713346 ~ 16715975 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCGCTTTCTTCCAGGTCGGTggggttgtgttgttgttgttttggatattattattttaaagtttcttATGCAGGTCATgcttgtttaataataataataataaaattgcgTGCGATAAAAAACGATTAAGCGAACTGTAGCGCTACTAAGGCAGCGGTGTTATTGGTTCGGTGCCAGTCCAGGGGTCTCTGGATGTTGGGGCTGCGGACTCTGCTGGGAATCGGGGTCCTGGTGACATCACACTGCGCGAGGAGGGGTCGGGCTCTGGCGCACAGAGGCTCGTGTCCGGTGACCAGTGGCAGCGGGGCGTCCGGCAGGTTCAGCTCTTCCTCCATGGAGGCGGCCAAGCCGATCAGATACCTCGGCCAGGAGGAGGCCCAGAAGATCGACGAGGAGCTCTTCACAGAGTACCGCTTCAGTGTGGACCAGCTGATGGAGCTGGCAGGGCTGAGCTGTGCCACCGCCGGGTACGAGCCCACCATTGTGTACCCCAAGCGGCCCAGCAAGCCCCTGTTTGAGAACCTCACGGTGCAGTGCGAGAAGATGGACATCCTCTTCCTCCCGGAAATGCCGGCAGAGGCCGACCTGATCGACGAAGCTTACAACCTGGTGATCGACGCCATCTTTGGGTTTAGCTTCAAGGGCGCCCCCGACCTACTCATCTCCCTCACGGCGCCCAAGAAGGCGGCCCTGCATTTCCGCGGGCGCTACCACTACCTGGGGGGCCGCTTCGTGCCCCCGGCCCTGGAGCAGAAGTACCAGCTCAACCTGCCCCCGTACCGCGGCACCGACTGTGTCCACCGGCTGCCCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU171166 lncRNA upstream 64784 16643757 ~ 16648562 (+) False AMCG00012348
TU171156 lncRNA upstream 81082 16620255 ~ 16632264 (+) True G136195
TU171150 lncRNA upstream 147115 16565899 ~ 16566231 (+) True G136191
TU171136 lncRNA upstream 174197 16538062 ~ 16539149 (+) True G136177
TU170969 lncRNA upstream 517232 16193975 ~ 16196114 (+) True G136051
TU171207 lncRNA downstream 43878 16759853 ~ 16765108 (+) True AMCG00012351
TU171209 lncRNA downstream 113075 16829050 ~ 16831802 (+) True G136236
TU171211 lncRNA downstream 126592 16842567 ~ 16907105 (+) True G136237
TU171268 lncRNA downstream 196260 16912235 ~ 16914695 (+) True G136286
TU171280 lncRNA downstream 240714 16956689 ~ 16957295 (+) True G136297
AMCG00012349 mRNA upstream 7153 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012347 mRNA upstream 42647 16650333 ~ 16670699 (+) True AMCG00012347
AMCG00012348 mRNA upstream 65984 16560649 ~ 16647362 (+) False AMCG00012348
AMCG00012343 mRNA upstream 176101 16530753 ~ 16537245 (+) True AMCG00012343
AMCG00012342 mRNA upstream 195725 16513859 ~ 16517621 (+) True AMCG00012342
AMCG00012351 mRNA downstream 17451 16733426 ~ 16764790 (+) False AMCG00012351
AMCG00012354 mRNA downstream 96810 16812785 ~ 16818439 (+) True AMCG00012354
AMCG00012360 mRNA downstream 161402 16877377 ~ 16900435 (+) True AMCG00012360
AMCG00012366 mRNA downstream 261597 16977572 ~ 16984994 (+) True AMCG00012366
AMCG00012369 mRNA downstream 277504 16993479 ~ 16997064 (+) True AMCG00012369
TU171182 other upstream 15955 16674279 ~ 16697391 (+) False AMCG00012349
TU171165 other upstream 64784 16643757 ~ 16648562 (+) True AMCG00012348
TU171045 other upstream 280533 16393699 ~ 16432813 (+) True AMCG00012338
TU171007 other upstream 454014 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 530678 16176399 ~ 16182668 (+) False AMCG00012318
TU171221 other downstream 95731 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 150562 16866537 ~ 16867448 (+) True G136255
TU171236 other downstream 155863 16871838 ~ 16875600 (+) True G136258
TU171279 other downstream 247355 16963330 ~ 17000089 (+) True G136296
TU171327 other downstream 410038 17126013 ~ 17129339 (+) True AMCG00012374

Expression Profile