RNA id: AMCG00012351


Basic Information

Item Value
RNA id AMCG00012351
length 3102
RNA type mRNA
GC content 0.66
exon number 23
gene id AMCG00012351
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16733426 ~ 16765108 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGTGTTCCCCTCCGATCGCTCGTGGCTTTCCGTAGCGCCGCGCGGTGCTGGGGAAAGGTGGGGAGAGTTGTGGCATCGGCGCTGCTCCACGCCCCGCAGGGTGGGAGGCACGGCAGCCCTCTTCCCAGGGGACAGCAAGTCTGTCGTGAGAGGAGTTTGTCAGATCTCCTCTGCTGTCGGGGGCAGCACCATCTTGGAAGAAGTCATTGTCAACACGCTCCCCAGAATGCACTGGAGGAGGATGATGCCCCTCCTGAAGAGAGCTGCcaccacctggctcctcctgggGGCTCTGCTCGACCTGGCCTGGCCTTTGAACCCCAAAGACCCCAATGTCTGCAGCCAATGGGAGAGCTTCACCACCATCGTGAAGGAGACCTACGCTCACCCCTTCGACCAGGTGTACGAGGAGCCCTGTGCCGACGCCTGGAGCTTCTTCAAATGCAAGCGCCACAGTATCGTGTACAAGATCGCCTACAGGCAGGGCGTTAAGATCGACTATCGCAAGAGGAACCAGTGCTGCCCTGGATACTACGAGAGCAGAGAGACTTGTGTCCCCCGCTGCACCCGCGAGTGCGTCCACGGCCGCTGCCAGGGCCCGGACCGGTGCCAGTGCGAGCCAGGCTGGCGAGGGGAGGACTGCTCCAGTGCCTGTGACGGCCGGCACTGGGGCCCCGACTGCAGCCGGGACTGCCAGTGTGAGAACGGGGGCCAGTGCGACCCCCAGACCGGCGCCTGCCGCTGCCCACCCGGCTACAATGGCTCCCGCTGCCAGGACCCCTGCCCCCTGGGCACCTTTGGCCAGGGCTGTGCGCAGCGCTGCCAGTGTGGCACGGGGGGCACCTGTGACAGGGCGACCGGCGAGTGCCACTGCAAGGACGGCTACACTGGGACCCTCTGTACGGAGCTGTGCCGAAATCAAAGCTGCCCCCTACGGTGCCCCTGCCAGAACGAGGGGCGCTGCCAGGGCCTGGGCATCTGCGCTTGTGAGCCGGGCTGGACGGACTGCCTGTGTCACAATCATGGCCACTGTGACCCGAAAAGCGGTCAGTGTCACTGCATCCCGGGCTTCACTGGCGACAAGTGCCAGAAGGAGTGCCCGGTGGGGAAATACGGCCAGAACTGCTCCGGGCTCTGCGACTGTGTGAACGGGGCGCGCTGCTTCCACCTGAACGGGGCGTGTCTGTGTGGGCAGGGCTTCCGCGGGGGGCGCTGCGAGGAGCGCATGTGTCCGCCCGGGCTGTACGGGATGGATTGTAACCAGGTCTGCCTCTGCGATGCCGCGCACACGCTGAGCTGTCACCCCATGGATGGCGAGTGCACGTGCCAGCCAGGGTGGGCAGGGCTCTTCTGCAATGAGACCTGCCCCCCGGGTTACTTCGGCGACGGCTGCCGGGAGCCCTGCCCGTGCCCGAACGGTGGCACCTGTGACAGCGAGAGCGGGAACTGCCGCTGCGCCCCCGGATACACGggaGAGCACTGTTCTGACCACTGCTGGCGGGGCGCGGACTGCTCCATGCCCTGCGCCAGGGGGAGCTGGGGTCCTGGCTGCAACAGCACGTGCCAGTGTGCCAACGGGGCCACCTGTAGCCACCTGGACGGTTCCTGCAGCTGTCCTCCGGGCTGGCGGGGGGCGCTGTGTGATCTGCACTGCCAGGAGGGCACCTACGGGCCGGGCTGCGGTCTGCACTGTGGCTGCCAGCACTCGGGCAGCTGCGACCCCGTCAGCGGGCAGTGCCTGTGTCTGCCAGGATGGACAGGTGCCCTCTGCGAGCAGCCTTGTGCGGAGCGGCGTTGGGGCCTGGGCTGCAACAGGACCTGCACCTGCAAGAACGGCGCCACCTGTCTGCCCGCCGACGGCAGCTGTGTGTGCAGCCCGGGATATCGCGGCCTCCAGTGCCAGCGCAACTGCCACCCTGGGACGTTCGGCCTGCGCTGCGCCCAGACCTGCACCTGTCCCCTCAACGCCACCTGCGACGCCCAGACGGGAGACTGCCAGTCAGGCGGGGGCGGCAGCGCGGTGGTGCCCGTGTCTCCGGGGGAGCGGGAGTCGTGGGGCGCCATCGTGGGCATCATTgtgctggtgctgctggtgGTGCTCCTGTTCGCCCTGCTCCTGCTGCACCGCTGCCGGCGCCGGGACAAGCACAGCCGGGTGCCCACCGTGGCCTACTGCACCACCCGCACGCTCAACTCCGAGTACGCCGTGCCAGACGTCCCTCCCaactaccaccactactactcCAACCCCAGCTACCACACCCTGTCCCAGAGCAGGCTGCCCCACCCACACATCCCCAATAACCAGGACCGGGCGGGCGGCTCCGTCAAGACCACCAATAATCAGCTTTTCCTCGATATAAAGAACGCGGAGCGGGAGAGGCTGGGGCTGTTTGGAGCCGAGAGCAACGCCACCCTGCCCGCCGACTGGAAACAGCTCGACCCTGCCCTGCGCAAAGACCCAGATCTGCCCAAGGAGCGCCTGGACCTGAGCTGCAGCTCCCTGAACAGCGAGAACCCCTACGCCACCATCAAGGACCCGCCGCTGCTGCCCGGTCGGCCCTCAGAGAGCAGCTATGTGGAGATGAAGTCCCCGGCGCCGAGAGAGCGGTCCTACGTCGAGATCGGGCCGGGGTCTCCGACCGGCACCACAGCCAGAGAGAGGCGTGTGTTAGTGGAGGTGCCAGAACAGCTGCCCCCCGGCCATTACGACCTGCCTGTGAACAGCCACATCCCCGGCCACTACGACCTGCCGCACCGCCACCGGCCCCCCTCACCGCCCCGGGGCAGGCAGAGGCGAAAGCACAGCCCACTCCAAATCAAAACTAGACCCCCGAATCTCCTGCCCGGCGTGAAGTCCTACAGCACCTGCATCCATTTCGGCATCATCTTCTCACTGCAGTACTCTCCGACAAAAAGCCCTGGACGATTTCTCCTGCGTACTTCCTCTAAACTAAACACTTCTCGGTCTCGGATCGCCGTCTGCCGAAATACGGTCTCCGTTGGACTTTTTAATCGCCCTGGATCCGAGACCCTGGCGTCTGGGTtgcccctctccctgtccccaTCTCTAGAAGCATCTACACGGCCAGCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171166 lncRNA upstream 84864 16643757 ~ 16648562 (+) False AMCG00012348
TU171156 lncRNA upstream 101162 16620255 ~ 16632264 (+) True G136195
TU171150 lncRNA upstream 167195 16565899 ~ 16566231 (+) True G136191
TU171136 lncRNA upstream 194277 16538062 ~ 16539149 (+) True G136177
TU170969 lncRNA upstream 537312 16193975 ~ 16196114 (+) True G136051
TU171209 lncRNA downstream 64260 16829050 ~ 16831802 (+) True G136236
TU171211 lncRNA downstream 77777 16842567 ~ 16907105 (+) True G136237
TU171268 lncRNA downstream 147445 16912235 ~ 16914695 (+) True G136286
TU171280 lncRNA downstream 191899 16956689 ~ 16957295 (+) True G136297
TU171278 lncRNA downstream 192668 16957458 ~ 16978213 (+) True G136295
AMCG00012350 mRNA upstream 17451 16713346 ~ 16715975 (+) True AMCG00012350
AMCG00012349 mRNA upstream 27233 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012347 mRNA upstream 62727 16650333 ~ 16670699 (+) True AMCG00012347
AMCG00012348 mRNA upstream 86064 16560649 ~ 16647362 (+) False AMCG00012348
AMCG00012343 mRNA upstream 196181 16530753 ~ 16537245 (+) True AMCG00012343
AMCG00012354 mRNA downstream 47995 16812785 ~ 16818439 (+) True AMCG00012354
AMCG00012360 mRNA downstream 112587 16877377 ~ 16900435 (+) True AMCG00012360
AMCG00012366 mRNA downstream 212782 16977572 ~ 16984994 (+) True AMCG00012366
AMCG00012369 mRNA downstream 228689 16993479 ~ 16997064 (+) True AMCG00012369
AMCG00012367 mRNA downstream 257869 17022659 ~ 17029088 (+) True AMCG00012367
TU171182 other upstream 36035 16674279 ~ 16697391 (+) False AMCG00012349
TU171165 other upstream 84864 16643757 ~ 16648562 (+) True AMCG00012348
TU171045 other upstream 300613 16393699 ~ 16432813 (+) True AMCG00012338
TU171007 other upstream 474094 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 550758 16176399 ~ 16182668 (+) False AMCG00012318
TU171221 other downstream 46916 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 101747 16866537 ~ 16867448 (+) True G136255
TU171236 other downstream 107048 16871838 ~ 16875600 (+) True G136258
TU171279 other downstream 198540 16963330 ~ 17000089 (+) True G136296
TU171327 other downstream 361223 17126013 ~ 17129339 (+) True AMCG00012374

Expression Profile