RNA id: TU171207


Basic Information

Item Value
RNA id TU171207
length 4045
lncRNA type sense_over
GC content 0.46
exon number 3
gene id AMCG00012351
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16733426 ~ 16765108 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAAAGTGACCCATGCTCCGTTTGCTAAAATACCCAAATCCTTTTTTACTATGATTTGTAAGGATTAAGAGTGTGCTTTGCGTTTTCCCAGGTGCCTTTGGGATTGACGGGAGCACCAGCTACAGTAGCAGCCTGGGCAAATATTACAACAAGGATCTGCCCAAGGAGCGCCTGGACCTGAGCTGCAGCTCCCTGAACAGCGAGAACCCCTACGCCACCATCAAGGACCCGCCGCTGCTGCCCGGTCGGCCCTCAGAGAGCAGCTATGTGGAGATGAAGTCCCCGGCGCCGAGAGAGCGGTCCTACGTCGAGATCGGGCCGGGGTCTCCGACCGGCACCACAGCCAGAGAGAGGCGTGTGTTAGTGGAGGTGCCAGAACAGCTGCCCCCCGGCCATTACGACCTGCCTGTGAACAGCCACATCCCCGGCCACTACGACCTGCCGCACCGCCACCGGCCCCCCTCACCGCCCCGGGGCAGGCAGAGGCGGTGAGAGGGGTGTGGTGGGATGAGGGTGGGGGCTCCGGTGGTCAGCCTCACACTGCCCCCCTACAGACTGGACACAGACTGGCGCCACCTAGTCCTGTGGATCTGCTGCCACAGCTCCACAATTACAGAGGATTTTATCGACTTTAACAAGGCAAGTGCAAATGATTACAAAACCATCTCCCACAGGTGTGGGCCGTCACAAGACAGCGAtagagggggggaaaaacaaaaacctgtccTTTAGCAGACAGGGGGAGGGAGGCATAATGATACTTGCAAGGAGCCAGCCACGGAaacttcccacaatgcatcaggATGAAGCCAGTCATCTAGAGCTCGACCCAGGAGTGAACAAAAGGCGGCGCTGTTGCTATCCTGGACCCGAGCTCGGACCGCATGCCTGTCGTGATTTTAATACAGCCTGGGAGTGGAGGATGGTGGCACTTGTGACCAGTTAAGTAAATGAGTATGAGCAGAGGCACTGTTGTGGCTGGATCGGTCATCTGGATATTGAACTTCTACTTTTTGAAAGAGACATTctagttgttttttaatcacacgtcaaattagtttgttttcaatacGTTCGGGACTGTATCATTGGTCGACCCAAGAGTCTTTTCACAAACACCTGGTCGGGCGGGCTCTTGGGTTTGTAAATGTTcaggtgttgttgttgttgctctgaAGTATCTGCCCTCAAGTTCAGAGAGTCTTGTTCATGTCTTGTGGGAGAGCGACCCAGCATTCAGAACGTAACCTGTCAATGTATGtttgctgtgcatgtgtgtgtatatagtgtacATAAGATAAACACCTGTGGGGACGTGACaattttcatttctgttctaTGAAGTGATTCTGGGGATGTAGCCaacaaaatacaatgacatCAACCAAGTATtgtgaaaagtttatttttccatttgtttttaagtatgaaaaataaatattggtaaCACTGAATTCCATTACGTACTATGCAGTAAAAATAGAGcatttttccaaaaataactgAACCAGACTAACTCTATATATAGTATTTCTccatgtattatgtatttttgagaATTGGGATTGTGTGATAAGAAAATAATCAACAGACCTGAATTTACAATGGAGATTTTTCATTCTCCATAATTTATATGGAATTGAGCCCCTAAATCAACAAGCAATCTTCCTTTTAGCTAAATTACTTATTcgacacaaaacacacaaaaaaagaaactggatCCCGATTTAACCTTGAACTCGATCCTTGACCTTCCTGAGTACTTCTATGCATTTCTTTGGTCGTGTCGCTGCGGTTGATTTTCGGGCTTACAGATTTTCCATATCACCTGCTGTGCTGTACATGTGACCAATCAAAGCCGAGTTGGCcctcaaagaaacaaaattatcGAGGCTTCACAGAGTGTGTACCGAGACCCTTTTTGACAAGGTAAACGGTGCGTACAGCACTGTGACACCCTAAAGCTCATCACCGTGGAGAACACAGCCAAGCAGCTTTCCGGGCAGCTTAAGTCATTATTACAAGACAGAGAAGATGTATGCAATTCCTCATCCGATTTGGCTCGGAATTGATGTAGAAAAGAGGCGGCACCATTCCGGAACCCCTACTCTAACTGAACTAGCCAGTTCCTTAATTGCGTCATTGACCTAATTATCCACCAATCAGAACATTATCAGTTACAGTCCGGAGTGGAAACTTCCCGTTCTAACAGGACAAGTCCACCaagtttcacttttttttctcgCCTAGGATTCGGTTTTGGCCGAAAAATTtcaccccaaaaaaaaaaagcgaattCCATGTTCAAGCTGCGTTGAATCGAGCCGTTCCGTTTAGACACGATACtgtgagaaatatatattgtcatttacacCCCGTATCAAAAATAAGCTTTTtctcaaacaacaaaaatgtgtttagcaATACTTAGTCACATAGTGTTTGTAACATCTGCGTAATCAACAGAACTGAGTGTTACCAATATTGaaatcccccccctccccatacATTGAAGCAAGCTAACAATCCCACCAGCTGCACCTGGAGAGAGGCCCCCCGACGACATGAGTGGAGTGGCACTGACTGGGTTACAAAATAAGATCAAAAAGAATCATCCAGGTTCGTTACATTCTCTCTAATGGCAGTTcaagtaaaaaaacacaaaaaacagtgcaatacTGTGATCCTGGCCCCTGCTGCCGGAGAGCCACAAACCCAAAGATAAGTCATCCCTGCGGCCCCCATGTGGTCCTGCTAACAGACTCTTTGGTAAGAACGTGCAGAGAGAACTAACCCCAATATCGGCCGGTGAGAACAGAGTGATTATCACAGACAGCTGAAGGATTGTGGGTTTTAAAAGGCAGCGCTGTGCAGTGAAAGTAATTAATTTGGGAGATATGGAATTGGGAGGTAGAATGGACTCCCGGTCCTGTTTTTATCTCAATTAGGTAACCCGTCTCGGCATCTAGTCACCTGACGGGCCAGTCCCACAGTGGGTCGGTTTTCAAGTCAGGCTTGGCAAAAAAGATTGGGTGTTGAGGACGTGGACAAACATAACACCGCCGGGAATACATTTCGTATCCGTCCCGTCTTTATGAAGTAAATGATCAGActcaatcaaaatcaaataaatgtaaccttttgtaaatatatatattcaccaatacattttggaaaaacGAATGTAGCTGCCAATTGGGTCGTTTTGTCTTTCGCCCTAAACAAACACATCCTtcagattttaatatatatatataaaagtctttttttttttttttttttgtccggttattaaaataaactctcTAATCATCGACACAAATACCTGCGGTTGCCGATCTGTCATTTCTCTACGAGGACAGTTACAATCATCTATACCAAAAagatataagaaaaataaagtctATTGCCGACTACTCGACTATCAGAAAGCACAGCCCACTCCAAATCAAAACTAGACCCCCGAATCTCCTGCCCGGCGTGAAGTCCTACAGCACCTGCATCCATTTCGGCATCATCTTCTCACTGCAGTACTCTCCGACAAAAAGCCCTGGACGATTTCTCCTGCGTACTTCCTCTAAACTAAACACTTCTCGGTCTCGGATCGCCGTCTGCCGAAATACGGTCTCCGTTGGACTTTTTAATCGCCCTGGATCCGAGACCCTGGCGTCTGGGTtgcccctctccctgtccccaTCTCTAGAAGCATCTACACGGCCAGCCTAGCTACAGTCCTGCTTGGGATACTCATCTCTCTACTGTTACCAAGACTTATACCCGGCGTTAGCAAATCTATCCTACTAcctactgtaaatatatatatatatggctgcAGAAAAAAATGGCTTACGGTGTACAAAATAAGacttgtttcatatatatataaaaaaaataaactaaacaaaacataactaCTTGGCATAGAAACGTTTCTTCAGGTACTGCGCTCTTGTCCTGCTGGAATCGGACTCTTTCCCCGCCTGGGTCCAGCATGGGGCAGGTCTGGGGTTTACATGATGGAGCAGTTCTCCGCTCTGGGGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171166 lncRNA upstream 111291 16643757 ~ 16648562 (+) False AMCG00012348
TU171156 lncRNA upstream 127589 16620255 ~ 16632264 (+) True G136195
TU171150 lncRNA upstream 193622 16565899 ~ 16566231 (+) True G136191
TU171136 lncRNA upstream 220704 16538062 ~ 16539149 (+) True G136177
TU170969 lncRNA upstream 563739 16193975 ~ 16196114 (+) True G136051
TU171209 lncRNA downstream 63942 16829050 ~ 16831802 (+) True G136236
TU171211 lncRNA downstream 77459 16842567 ~ 16907105 (+) True G136237
TU171268 lncRNA downstream 147127 16912235 ~ 16914695 (+) True G136286
TU171280 lncRNA downstream 191581 16956689 ~ 16957295 (+) True G136297
TU171278 lncRNA downstream 192350 16957458 ~ 16978213 (+) True G136295
AMCG00012350 mRNA upstream 43878 16713346 ~ 16715975 (+) True AMCG00012350
AMCG00012349 mRNA upstream 53660 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012347 mRNA upstream 89154 16650333 ~ 16670699 (+) True AMCG00012347
AMCG00012348 mRNA upstream 112491 16560649 ~ 16647362 (+) False AMCG00012348
AMCG00012343 mRNA upstream 222608 16530753 ~ 16537245 (+) True AMCG00012343
AMCG00012354 mRNA downstream 47677 16812785 ~ 16818439 (+) True AMCG00012354
AMCG00012360 mRNA downstream 112269 16877377 ~ 16900435 (+) True AMCG00012360
AMCG00012366 mRNA downstream 212464 16977572 ~ 16984994 (+) True AMCG00012366
AMCG00012369 mRNA downstream 228371 16993479 ~ 16997064 (+) True AMCG00012369
AMCG00012367 mRNA downstream 257551 17022659 ~ 17029088 (+) True AMCG00012367
TU171182 other upstream 62462 16674279 ~ 16697391 (+) False AMCG00012349
TU171165 other upstream 111291 16643757 ~ 16648562 (+) True AMCG00012348
TU171045 other upstream 327040 16393699 ~ 16432813 (+) True AMCG00012338
TU171007 other upstream 500521 16250248 ~ 16259332 (+) True G136076
TU170961 other upstream 577185 16176399 ~ 16182668 (+) False AMCG00012318
TU171221 other downstream 46598 16811706 ~ 16863593 (+) True G136245
TU171233 other downstream 101429 16866537 ~ 16867448 (+) True G136255
TU171236 other downstream 106730 16871838 ~ 16875600 (+) True G136258
TU171279 other downstream 198222 16963330 ~ 17000089 (+) True G136296
TU171327 other downstream 360905 17126013 ~ 17129339 (+) True AMCG00012374

Expression Profile