RNA id: AMCG00012355


Basic Information

Item Value
RNA id AMCG00012355
length 751
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00012355
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16854236 ~ 16858406 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGCGAGTGCGGAAGTGGCGGTCAGCTGACAGGGCTGCAGCTGCCGGAGACGGAGGGCTGTGTTTGTCAGAGTCGTCCATCCGTTTCAGCTCCAGCTTTTCTGCCATCGCGGTGATGTTGCGGCCGAAGGCGCTCACGCAGGTGCTGAGCCAGGCGAACACGAACGGAGTGCAGAGTACCCTCAACATCTGGGCGGCCTACGACAAGAACGGGCACCAGGCCTTCAACGAGGACAAGCTCAAGTTCATCCTAATGGACTGCATGGAGGGCCGTGTAGCCATCACCAGAGTGGCGAACCTGCTGCTTTGCATGTACGCCAAGGAGACGGTGGGCTTCGGGATGCTGAAAGCCAAGgCCGAAGCTCTGGTTCAGTACCTGGAGGAACCTTTGACCCAAGTGGCAGCGTCCTAGGGGGCAGGGGGGAAGAAACTGGATGTGACGCTGCTCGAGTTTCCTGTCTGAAGGCTCGGGAAGGAAGCTGGACTCTTTTCCAGGCTTGTCACTGTGACGGACTCCATTCTGGATTTCACACGCAGCACAGGGCCGCCTGGAGTATttatctgtatataaatatatttctccaTTTGTGCGCTTGACGTTGTGGGTAAAAGGGGGACGCTTTTTGTAGCTGGGGTTGTCCCACACTTTATATGAacttgggggggaaataaatgctGAAGTACCAATATGGGGGATCTGTAACACCATATCTGACTGTGCAAGAACTAAAAACAACCTGCTTGGTAACAAA

Function

GO:

id name namespace
GO:0034613 cellular protein localization biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0016049 cell growth biological_process
GO:0005764 lysosome cellular_component
GO:0071986 Ragulator complex cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K20398 LAMTOR2; ragulator complex protein LAMTOR2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171191 lncRNA downstream 142603 16709574 ~ 16711633 (-) True G136226
TU171190 lncRNA downstream 149423 16704588 ~ 16704813 (-) True G136225
TU171189 lncRNA downstream 154032 16699989 ~ 16700204 (-) True G136224
TU171164 lncRNA downstream 211623 16642363 ~ 16642613 (-) True G136203
TU171145 lncRNA downstream 301955 16552030 ~ 16552281 (-) True G136186
TU171274 lncRNA upstream 53829 16912235 ~ 16914685 (-) True AMCG00012365
TU171292 lncRNA upstream 97736 16956142 ~ 16956359 (-) True G136307
TU171379 lncRNA upstream 180931 17039337 ~ 17039966 (-) True G136372
TU171383 lncRNA upstream 198206 17056612 ~ 17057001 (-) True G136376
TU171385 lncRNA upstream 206150 17064556 ~ 17098725 (-) True AMCG00012372
AMCG00012358 mRNA downstream 1663 16842567 ~ 16852573 (-) True AMCG00012358
AMCG00012357 mRNA downstream 13050 16829034 ~ 16841186 (-) True AMCG00012357
AMCG00012359 mRNA downstream 63337 16787004 ~ 16790899 (-) True AMCG00012359
AMCG00012353 mRNA downstream 81172 16765074 ~ 16773064 (-) True AMCG00012353
AMCG00012352 mRNA downstream 132189 16718762 ~ 16722047 (-) True AMCG00012352
AMCG00012356 mRNA upstream 4940 16863346 ~ 16875615 (-) True AMCG00012356
AMCG00012365 mRNA upstream 53086 16911492 ~ 16913893 (-) False AMCG00012365
AMCG00012363 mRNA upstream 57115 16915521 ~ 16916696 (-) True AMCG00012363
AMCG00012362 mRNA upstream 64400 16922806 ~ 16923984 (-) True AMCG00012362
AMCG00012361 mRNA upstream 86899 16945305 ~ 16951831 (-) True AMCG00012361
TU171188 other downstream 154445 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 155126 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 421423 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 430336 16418192 ~ 16423900 (-) False AMCG00012340
TU171073 other downstream 539843 16312721 ~ 16314393 (-) True G136125
TU171387 other upstream 235093 17093499 ~ 17133907 (-) True G136378
TU171432 other upstream 343368 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 350372 17208778 ~ 17211050 (-) False AMCG00012385
TU171433 other upstream 355438 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 375522 17233928 ~ 17242827 (-) True G136408

Expression Profile