RNA id: AMCG00012360


Basic Information

Item Value
RNA id AMCG00012360
length 3186
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00012360
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16877377 ~ 16900435 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAATGCCACCAGGAGACCGTGCGGGTGGCTGGTTACAACCGGGCCCCCACCATGGAGGACGGGGCCACAGTGGCCTACGTCGAGGCCGGCATCAGCGAGATCCAGCGAATTGGTGAACCTTGGTGCCACCAGCGCGCCACACCCTGTCACCAGGGACACCCGCTTCCGGGGCCATTTCCTCCCCCCGCACAGCAAAGGGTGGCAAGCATTGAGTGCTGTGACCCCTGCACTGCAAGAGTAACCTGCAAGGCAGCGGATGCGTGCCCGGTGGCCTGGCTGAAGCAGTCCGAGTCCCCAGCAACTGAGGGGGACATTCTGCCCGCTCTGCCGTCTGCGGGGGATGTCATGCCGCTCCCGCCTCCGCCTTCTGAGCGGAACTCCGGCTGCTCCTGCCTCGGCAGCCTGAGGGGGGTGACTTTCCTGAGCTCGAGAGGGAAGTCAGCCTGCCACCGCCACCCAGGGAGGACGTGCCCGCAGCGCCCGGGGCCGCCAGCCTGCTGCCGCCGCCTGGGGATGAAGTACCGGTGTCGTGGCTGCTATTGTGTCCTGAGGGGGCACCACCACTGCCTGGGAGATCACCCCACCCGGCGGTGGAATCTGGAGGGGACGGGGAGAGGGACCATTGCCTCACCCAGGGTCACAGAAGAGGGAGGACAGTGCCAGAGTGACATAAAAAGCGTCTTGAGGGATGAGAACATCTCCCTCGAGTTACAAGACAAAATTATCCACTATTTCAAACACAAGTGGACCTGCACTAGAGGCAGGAACACGGAGGTGATCTTTAGGGACATTCCCAGACAAATGAGGGCAGACATATTCGAGCAGACCGGTTTGGAAGCACTTCAGCAGCACGACATCTTGGTGAATATGTCAACACCCTTCCTGGAACACCTCTCCACCAAAATGCGGCTGCTGAACTTCACTTCAGGGGAGTACCTGGCTCTGAGAGGAGACGTCGCCACGCTGATGTTTGTGGTGGTGAATGGGACAGTGAAGGTGATCAGGAACGAACAGCCCAAGATGGCTGTATCTGTGACTAAAGGCGATGGGGTGGTGGTTTTctctgtgacctctgaccctacCAGCAACTGGCCGGTGTTGTGCCAGCTGTTGGGCAGTCTGTGCTGCAGCCCTTTCTGCCTGGTGTCCCGGAGTCTGAGGCGCTTCTACTCGGGCACTCAGGCCTCCCTGGGGACTGTGCAGATCATGGTTGGTCTGATCAACATCGGGTTAGGAGTCATCCTTCAGCAATTTGATTACTATGAATCCCATCCTTTTTGGCTGGGAGGCATGTTCATTGCTGCAGGTGTGATGTGCGTCTTCGCTGACCGGTTCCCCAACCCTTGCTTGGTGTCTCTGACGGTCTGCACAGACCTGGTGAGCGCCATGCTGGCTGTGACCGCAATCGTGCTGTACTCTGTGAACTTGGCCAATAGAGATGGCTTGTACTATTTCTGTCGCTTCAATGATGACGGTTATCACCGTTCCTGGTATGCGACGACCACGTCGCCCAACCCCGAAGATGAACGCATCCAGCAGATGAACAAGGAAAAGTGCCTGGAGGTGACCTTGAGGGGGTTGCGGATCATGCTGATAGTGGTCAGCGTCCTGCAGCTGTGCGTGGCGCTCAGCGCGGCGACTCTCGGCATCAAGTGCTTGTGCCGCAACAAGAGGGAGCCGAAGGTAAGTCCGCGACGGCCACGCGAACGGCCAGACGCCTCTAGTCACTGCCAGATCTCTTGTCACAGAGCTACGATTTGACTGAACTGTAATAAATTGTAATCATTGCTTAATATTATATTCAGACCATCTGATTACTTGTCTGATTACTATAGGTACATTTGTCAATTATTTTACCATCCGATTACATTTTCGGAGCCGTCTGATCTGTTTCCAGAATTCACAGTGGATTAGATGCGTTTTGTCTTCTAGTTTCCGCCAATGTCTTCACTGGGTAACTTGAGAATGCAGTGCATGTTGTACTGTGTGAATGACGGGATATCATTGTGTGCGTCTCTGGTAATGACAGAATATACAGACGCAGTTCGGTCAGCTGATGAACCTttataataggaaaaaaaatgttctggCCTTTGATTTGATGTAAGATGAATGCACGTGGCACAAACTATCAAGGAGCTACACATgaataaatcaagaaaaacaggaaaaatagtCTGGAGTGTAAAGTGTGAATATACAGTCCATCACGCCTCCCAGGTGGTTTTGCTCAGAGGcctgtcatttattattattttttattattgcatgtCATAATGGCAAACTGACAACTATAATTGGCAATTTCCAATCGGGGTGGGTGAGAAATGCAAACTATTTGTGTTGCACCGTTGATGTCTTGCAGCCCCTGTCTGACGTTGAACTCTCCAAGCCACTTCTGGAAGAGGACACCGATGACCCAGAAGCCTgaagaaaaccaacaaaagaaacataacGCAATGGTCCCAATTGCATTTTGGCAATCTATAAACCACTTCTTATCGGGCGCCTAATTACCTGATTATCATTCACTTCCTGTTAGGTGTATCATTACCCTTTTTCCCCACATCAATATCTATTggttatacattttctaatatcTCGCATGTTAAAGGGGTGTCCATTTCCGTGTAACTCTTTTGGGGGCCCAATCTGTCAccagttttgcatttatttcaagaTGGGGAAGAACATCTCTCAGAAAAGATATCTCCAAGATGGAtcaaaagtaaatgaataaaaggAGTATAATATTTGACTTTTGACACCAGTTTGCACGATGAATGTCAAGGCTTTGCTCTGAACCTGCAGAAGCGTTTCAGAAGCGTAAAGtccacagttttgtttctgtgacCGTCTGAGGGGCCAATGTGGCTCTTGTGGAATTGTGTTTGGAATGGAGGACAAGCAAAGAAATCCTCCCCCATCCTTCTGGGATGCGAATGACAGAGCTGTGTTTACTTTAGATACAACGTCCTTTTCTTTCAGCCAAAAGGTGTGGTAGTTGTAGAGAGAAGGATCATGGGAGAAATGGCCCCTGTTCACAGAAATACTTTGACTTGTGAGATGCGATTCTATTCATAGACTCTCATTTAGTAGTCGCCTCCTAAGCTCTTATCGACCATACCTATAGGAGAGCTTTAATCTTGCAGTATTTGCACTGACATTTAGCACTTTTGATTGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171209 lncRNA upstream 45575 16829050 ~ 16831802 (+) True G136236
TU171207 lncRNA upstream 112269 16759853 ~ 16765108 (+) True AMCG00012351
TU171166 lncRNA upstream 228815 16643757 ~ 16648562 (+) False AMCG00012348
TU171156 lncRNA upstream 245113 16620255 ~ 16632264 (+) True G136195
TU171150 lncRNA upstream 311146 16565899 ~ 16566231 (+) True G136191
TU171268 lncRNA downstream 11800 16912235 ~ 16914695 (+) True G136286
TU171280 lncRNA downstream 56254 16956689 ~ 16957295 (+) True G136297
TU171278 lncRNA downstream 57023 16957458 ~ 16978213 (+) True G136295
TU171337 lncRNA downstream 226720 17127155 ~ 17209359 (+) False G136341
TU171352 lncRNA downstream 264541 17164976 ~ 17172106 (+) True G136351
AMCG00012354 mRNA upstream 58938 16812785 ~ 16818439 (+) True AMCG00012354
AMCG00012351 mRNA upstream 112587 16733426 ~ 16764790 (+) False AMCG00012351
AMCG00012350 mRNA upstream 161402 16713346 ~ 16715975 (+) True AMCG00012350
AMCG00012349 mRNA upstream 171184 16690822 ~ 16706193 (+) True AMCG00012349
AMCG00012347 mRNA upstream 206678 16650333 ~ 16670699 (+) True AMCG00012347
AMCG00012366 mRNA downstream 77137 16977572 ~ 16984994 (+) True AMCG00012366
AMCG00012369 mRNA downstream 93044 16993479 ~ 16997064 (+) True AMCG00012369
AMCG00012367 mRNA downstream 122224 17022659 ~ 17029088 (+) True AMCG00012367
AMCG00012370 mRNA downstream 141760 17042195 ~ 17051046 (+) True AMCG00012370
AMCG00012368 mRNA downstream 156095 17056530 ~ 17063053 (+) True AMCG00012368
TU171236 other upstream 1777 16871838 ~ 16875600 (+) True G136258
TU171233 other upstream 9929 16866537 ~ 16867448 (+) True G136255
TU171221 other upstream 13784 16811706 ~ 16863593 (+) True G136245
TU171182 other upstream 179986 16674279 ~ 16697391 (+) False AMCG00012349
TU171165 other upstream 228815 16643757 ~ 16648562 (+) True AMCG00012348
TU171279 other downstream 62895 16963330 ~ 17000089 (+) True G136296
TU171327 other downstream 225578 17126013 ~ 17129339 (+) True AMCG00012374
TU171339 other downstream 229339 17129774 ~ 17214883 (+) False G136341
TU171331 other downstream 229545 17129980 ~ 17134830 (+) True G136341
TU171333 other downstream 330941 17231376 ~ 17234949 (+) False G136341

Expression Profile