RNA id: AMCG00012364


Basic Information

Item Value
RNA id AMCG00012364
length 1470
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00012364
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16960383 ~ 16965871 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGACCTCACACCAGGGCTGTGCTGTGGCCAGGAAATGTGACATTCATCCCCCAGTTACCTGCAGAATCAAGCCAGCTAACGCGTCCGACTGCAGGGAAGAGACTCCGCTCCCCGTCTGGCCTGGCCATGGGCGACACCGAGAACATCAGGAAGACGGCCGCCAAGGTGCTGTCTTGCGTGGAGAAAGTCTCCTCCTTCGCCACCTCCATCGACCCCCTCTTTGGCATCGTCACCTCCCTGGTGGCCGTCGTGCGGAAGGGCGTCTACGACGAGGAGGCCAACGCCCTGGAGGAGGAGTTCCAGACGGTCCACACCAAGCTGGAGAGCATCTCGCAGCAGAACAGGCAGACCCTGAAGCAGATACGCATCGACGAGATCCACGAGACCTTCTCCAAGTACGAGGAGTACCTCAAACACCAGTACCAGGCCTTCAGCAGCATGGTAGAAATGGTGAAGACCGACCCGGAACACAAGGAGAGCCACTTGCAGGACTTCCAGGACACGTACGAGAGAGACAAGGGCGAGCTGAGCCTGGACGTGTTCTACTACGGGGTGATGGGGACGCGCCGGGCCTTCGGGAGGCCTCTGCTGAAGGTCTACATGGAGCACTGCGACGGCAACATCAAGGTCATGGAGCAGAGGTGCTCCCACCTGACCAACCTGTTCCACATCGGGCTCATCTCGCTCATGGCCTACACCGCCGTCATCGAGGACGACGAGGACGACGTGAAGTGCAAGTGGACCCAGAGGGTGGTGGACATCCAAGCCAAGATGCAGGAGGAAGCCATGTCCGACGACATCCAGGAAGACCGTGACAAGCTGAAGAGGGGCATTGTGAAGGTGCTGGAGTGTGTGGCCACCATCTCGTCGGCGGCCGCCGTGGTCAATCCCATCTTCGGCATCGCGGGCTCGCTCATCCGCGTAGTGCTGCACCAGATCGACGATGAGGAGATCCAGACCCTCAAGAGGGAGTTCAACAGTGTCAACCGAGCCCTGGAAGACCTGTCGCAGCAGAACCGCAATGCCCTGCTGCAGATCAAGAAGGAGACCGTGGACGGCCAGTACTCCAAGGTGGAGGAGAACCTCAAGAACCAGTTCCGCAAGTTCATGGAGCTGGTGGAGGCCCGGCCCGACCTGCAGGGCCGCAAGAGGGAGGATTTCGAGGAGAGCTACAGCAACGACCTGGGCGACCAGAACCTGCACTCGCTGTACGACGGCGTCATGGGCAAACCCAAGCTCTTCAGCAAGCCCATCCTGGAGGTGTACATGAAGCACTCGGGGGGGGACCGCAGGGCCATGGAGCGCCTCTGCACCCGGCTCACCTACCTGTTCTGCATCGGGCTGATCGCACTCATGGGCTACGCGGCCGTGGTGGGCGACGACGAGGAGGGGCTGAGCGAAGAGTGGACCGAGAAGATGGAGGACGTGCAGAGGCGCATGCAGGAGGTGCTGAGGATGTGCAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171292 lncRNA downstream 4024 16956142 ~ 16956359 (-) True G136307
TU171274 lncRNA downstream 45698 16912235 ~ 16914685 (-) True AMCG00012365
TU171191 lncRNA downstream 248750 16709574 ~ 16711633 (-) True G136226
TU171190 lncRNA downstream 255570 16704588 ~ 16704813 (-) True G136225
TU171189 lncRNA downstream 260179 16699989 ~ 16700204 (-) True G136224
TU171379 lncRNA upstream 73466 17039337 ~ 17039966 (-) True G136372
TU171383 lncRNA upstream 90741 17056612 ~ 17057001 (-) True G136376
TU171385 lncRNA upstream 98685 17064556 ~ 17098725 (-) True AMCG00012372
TU171391 lncRNA upstream 126672 17092543 ~ 17093357 (-) True G136382
TU171392 lncRNA upstream 136532 17102403 ~ 17103055 (-) False G136383
AMCG00012361 mRNA downstream 8552 16945305 ~ 16951831 (-) True AMCG00012361
AMCG00012362 mRNA downstream 36399 16922806 ~ 16923984 (-) True AMCG00012362
AMCG00012363 mRNA downstream 43687 16915521 ~ 16916696 (-) True AMCG00012363
AMCG00012365 mRNA downstream 46490 16911492 ~ 16913893 (-) False AMCG00012365
AMCG00012356 mRNA downstream 84768 16863346 ~ 16875615 (-) True AMCG00012356
AMCG00012371 mRNA upstream 19991 16985862 ~ 16990109 (-) True AMCG00012371
AMCG00012372 mRNA upstream 99466 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012373 mRNA upstream 115036 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012385 mRNA upstream 242944 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012384 mRNA upstream 280219 17246090 ~ 17254514 (-) True AMCG00012384
TU171188 other downstream 260592 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 261273 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 527570 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 536483 16418192 ~ 16423900 (-) False AMCG00012340
TU171073 other downstream 645990 16312721 ~ 16314393 (-) True G136125
TU171387 other upstream 127628 17093499 ~ 17133907 (-) True G136378
TU171432 other upstream 235903 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 242907 17208778 ~ 17211050 (-) False AMCG00012385
TU171433 other upstream 247973 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 268057 17233928 ~ 17242827 (-) True G136408

Expression Profile