RNA id: TU171274


Basic Information

Item Value
RNA id TU171274
length 2451
lncRNA type sense_over
GC content 0.45
exon number 1
gene id AMCG00012365
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16911492 ~ 16914685 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCTTTGTGAGGCTTGAGTAAGTCTTTTCTCTTGAGGTCACACCCTGCAAACGAAGCTCGGGGGCTACAGTACTGAAAAGTACAGAGCTGAAATCGAAACCCTTTTGGCCTCTTTAAAACTACCCCCCAAAACTCGTTCTGAGCCAGGGGGGGTGTTCGCTCTCCAGCGAGTCAGCGCTCTGATTCAGCCGCAGGCATCGGATCCAATTTTCACTTGTTGCGAGAGACACTAGGGCATTGTTCCAGCCTGGTGGGATAGAATACCTCCCCTTCCTATTTCTGTAAGCTTTTCTTTCCACGACCACAGCACTTCCACCCGAATTCTATTCCCAGTCATCGGGGCCAGCCTGCTATGGGCTTTTCATAACGACCTCGGCACCCCCACCCACACAGGGCTATAACTCTCATGTTTGCATTAGATCTCCCTCACAGATTGCACCGTCAAGCTCGACTTCGCCTGATCAGTTTTTACTGCCCGCCCTATCGCCCTATTTCCTCACGGATATTCTTGCGGTCGAGGGGGAATTCTGGGATTGCACTTGTACAAAagccttctcatccctggcttACCGGGTCCAGTTAAAAAACTGCAGCCAGCAGGAAACAGTTTGGACTCCCTTTAGGTGACCGTGTGATCTGTGTAGTGCTTTAAGCATTCCTCGGGTGCCGGCTGTTGCCCCCACTTTCACCTCTTTGCCgtaaatctgaattaaaaagaGAGGCCCTGGTATTCGTATGTTATGTGTTCTTGCACACGTGTCGGCACCAACCTGTATCCTGTAAGACCGGAGATGAATCTATTTGCTGGGAAGTCCgttttttgtgtgatttgttttttgcactGAACCAGATTTTACGAGGCGgttcatttgaattatttggaAAAGATCAAGCAAATAAAAGCAATTGTCAGTGTTTGAAACCGCCTTGGCTCAACACAGTTTATACTCTGGgacgggggggagggggggcatgtGAGTGTCTTATCGGACTGTCCTGAACACATTCCTGTCGTGAAGTGAATCGGTGCGGTATTTCTGGGGATTTGGGAATGCAATTGTGAAAGCGGAATAGATGTTTCGGAAGACTTTGAGAATTCCTTACTTGTTGTGAGACATCTTTACACCCCAGTGCCCCCTCCCACCACATTTCCTGAATGCCCTGCATGCGTTTCAATACCAGCTCGACCTCCAAgactctccccccctctctttaaTGTGGTAAGGGCTGGGCAGCTTTGATGTTGGCTCTGAATGCAACTCCAATGTTTGGACCACTCCATTCTCTGCTAATTGTATGGTTTGcggtttgttttgtctgtctttCATTCATTCTATTTATGTAAAACTGACAGAACTCCCGTAAAACTCCTAGGAGAGCACTGAACCCAACTCCAGTTCACTGCCAGGTCTCGTTATCCAATACCATTGTCCGATAGGTTTGCCCTGATCCCAGTTAGACCTTAagcagatttagttttttctttggaGGGCTTGGTTCAGTCATTAACTCTTTCATGGTAGAAGAATTTCATATTGCGCTCCAGTTAGGGCTAAGGAAGGTATAATAGCCTCTGATTATCCACCCTGTGCAGGTTTTCGTAATGGGGTGCAGATACGTACCGGCTAGCGTCCGGCACAGACTGAGGTGATGGGTATataatatcattaaaaaaatactaaaaacaataagactgaaaataatacaacttaataaaaaatactaaaatgtatcctctttttttaacaataaacaaaGTATAATGGTTCAATTAAACAATCTGGAAATTcagctttatttatgtatgctcCCAAGCATTGACCACCTGTGTCTGCATTACTCGTGCCTGCCGTTTAACCCCTTCAACACCGCAATCTGTTGTAGTGATCGAGTGCCCCTTTAATGCCGCTTGCTAACGGCAGCATATGAATAACTGAAGAAACAAAACCCTACACAAAGAGGTTGCTCTGTGTTTGTATCTAAAGCTGGGGCAGCATATGAATGAcaggagtctctctctctctggatctAATGATCTATTTACAGTGACTGCTGTCTTTTGCCAAGACATGTTAAATACTGATTAGCTTTGCTCTTATGCCAGTTTGCAGGAGGACCCCAGTAGGTTGGAGAGGTCGGAAGAGGTGGCCAGGCAAGGTTCTGTACATAAGCAATACTTTAATGCCAAAGACAACGTATGGTAATTTTCCCCCACTGCtacaataagaacataagaacataagaaagtgtccaatcgagaggaggccattcgacccattgtgcccgtttggtgtccattaataactgagtgatccaaggatcctatccagtctatttttaaatgttcccagattgtcagcttcagccacatcgctggggagcaAAAATGTTATGACTTGCATAATatggagatttgtttttataatgtacaataaaaaattgaaaagtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171191 lncRNA downstream 200602 16709574 ~ 16711633 (-) True G136226
TU171190 lncRNA downstream 207422 16704588 ~ 16704813 (-) True G136225
TU171189 lncRNA downstream 212031 16699989 ~ 16700204 (-) True G136224
TU171164 lncRNA downstream 269622 16642363 ~ 16642613 (-) True G136203
TU171145 lncRNA downstream 359954 16552030 ~ 16552281 (-) True G136186
TU171292 lncRNA upstream 41457 16956142 ~ 16956359 (-) True G136307
TU171379 lncRNA upstream 124652 17039337 ~ 17039966 (-) True G136372
TU171383 lncRNA upstream 141927 17056612 ~ 17057001 (-) True G136376
TU171385 lncRNA upstream 149871 17064556 ~ 17098725 (-) True AMCG00012372
TU171391 lncRNA upstream 177858 17092543 ~ 17093357 (-) True G136382
AMCG00012356 mRNA downstream 36620 16863346 ~ 16875615 (-) True AMCG00012356
AMCG00012355 mRNA downstream 53829 16854236 ~ 16858406 (-) True AMCG00012355
AMCG00012358 mRNA downstream 59662 16842567 ~ 16852573 (-) True AMCG00012358
AMCG00012357 mRNA downstream 71049 16829034 ~ 16841186 (-) True AMCG00012357
AMCG00012359 mRNA downstream 121336 16787004 ~ 16790899 (-) True AMCG00012359
AMCG00012363 mRNA upstream 836 16915521 ~ 16916696 (-) True AMCG00012363
AMCG00012362 mRNA upstream 8121 16922806 ~ 16923984 (-) True AMCG00012362
AMCG00012361 mRNA upstream 30620 16945305 ~ 16951831 (-) True AMCG00012361
AMCG00012364 mRNA upstream 45698 16960383 ~ 16965871 (-) True AMCG00012364
AMCG00012371 mRNA upstream 71177 16985862 ~ 16990109 (-) True AMCG00012371
TU171188 other downstream 212444 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 213125 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 479422 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 488335 16418192 ~ 16423900 (-) False AMCG00012340
TU171073 other downstream 597842 16312721 ~ 16314393 (-) True G136125
TU171387 other upstream 178814 17093499 ~ 17133907 (-) True G136378
TU171432 other upstream 287089 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 294093 17208778 ~ 17211050 (-) False AMCG00012385
TU171433 other upstream 299159 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 319243 17233928 ~ 17242827 (-) True G136408

Expression Profile