RNA id: AMCG00012370


Basic Information

Item Value
RNA id AMCG00012370
length 2563
RNA type mRNA
GC content 0.63
exon number 19
gene id AMCG00012370
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17042195 ~ 17051046 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtcagtGCTGCAGAATGACTCCAGTCTGATGGGCTTGTTCTACAGCGTGTTGTCCTCTCTGCCCCCCACCAAGACACAGGGACTCCCCTCCCCATACCAAAGCCACAACTATAACACCCCAACCCCCACCATGCAGGACCAGGCCTGGGCCTTCCTTTCTCCGTTGTGCTGGGACGCCCTGTTCCAGGGGGGGCCCTCTCTCCCCCGGCCACACTTCAATCTGCTGGCCTGGGGGTCACAGCCCCTGCTGCAGGACAGTCAGGGCCCCCTAACTCCCCTTCCCTCACAGCTGGCCCAAGAACATGTGGGACACAAGATGCAGGTGTTCACGGCTGTGTTCGGGTCTCTCTCTCCGGCGTGGCGTTCCCAGGTCCTGCAGTGGGTCAAACCGCTCATCGTCCAGAACCTCTTCAACTGCAGCCTGGCCCCCCTGAACGCCACCATCCCGGGAAcacgCTGCTTTTCTGGGCTGCAGTGGCTGAGTCCTGCAatgTGTGAGTTCGCCAAGAAGCCGCAGTTCCAGATGACGTTCTCGGGGGCAGGGGAGGCCCTGGAGCACACCGTGGCACGCCGGCTCCTGGGGCAACTCCAACAGAACTGCCCCAACAGCACTCAGAGCCCAGAGCGgctGGGCAGTCTAGTGTGTTTCATGGATGATCTGCAGTCAGTCAATGCATCAGTCTATCAGCAAGTTTTACTGGAGCTCAATGGCTGCAAGAACTCAGGTGTGGAAAAgttgaAGAGGCAGCTGGTGGAGAAGATGATGTCTTCAGGGTCGGTAATGTCTGCCGGGACCCTGCATTCCCTGGGGACCGCGGCGTCCTCCCTGTCCATCTCCCAGCTGGCCTCTCTATCCCTCGATGAGCTGCAGGACGCCCTGTCAACCCTGGCGGGGGCACACTGGACCCCCGCGCAGGCTCGCACCCTCGCCAAGAAACTCACCGCGAACGGGGGACAGGTGAATGTGACAATGTTGAGGGCTATGGGCTCGGTGATCCGGGGGATGAACAGAGAGGTCCTCCAGGCACTAGGGGGCGCCCTGCTGAGGAGCGGAGACCTGGACATCCTGGCCAAAGACATGTCCACCCTGCAGAGGGCTGCGGTGCTGGAAGGACTGCTCAGTAATGCCAGTGCCGCGCTGTTGCTGCAAAGTGTGTCCGGCCCCCTGCTGGCCAGCGTGTCACTGCACTGCCTGCAGTCGGCCAACCTCAGCTCAGCCCAGGACCTGCAGGGCAAGAACTGGACCATAGCacagGCTGCCTACCTGGTGAAGAGCATCTTCAAAGGGAAGATAGGTCCTCAGGAGATCAGGCAGGACCCCCTAATCCTAACTCTCCTGTTCAATCTGGACACAGCCCTGTCCCTATCCCTAAGCCTGTCCCTGACCCAGCCCTGGCCCAGCCGTGACCCTGTCCCTGACCCTGTCCCTGACCCTGTCCTTGACCCAGCCCTGTCCCTgaccctgtccctgtccctgtccctgaccctgtccctgtcccagccctctccctACTCAGCCttgtccctctccctgtccctgtgCCTGTCCCTGACCCTGTCCCCGACCCTGACCCTGtgcctccttctctctctgtactcCAGTGCCCTGGGCTCAGCGggtaaAAACGCGTCAACTCTGACTGCGGATGATGTTTCTGTTCTGGGGCCCCTGCTGTGTGAGCTGGGGCCCCAAGATATGTCCGCCCTGCCCGCCACCATCCTGAACACCAGCCTGCCCAGCCTGGCCCAGTGCCGGCCGTTCCTGTTGCTGAATGACACCGCCCTCCGCTCACTGCCCAGCCAgCCCTGGTTGAAGACAGCATTGACAGACCTCCTGGACGCTCAGCCGGCCCCCTCAGCCGTGCCCCACCCCCCAGAGTTCCAGCAGGGCCCAGACCTCACCGCCCTGCGCTGGAAACTGTACTCCCTCACCACAGCGTCCGCCACGGGCAACCGCCGGAAGCGCGAGGTGGCCACCTCCCCCACCGTACAGCAGATTCTGGATCTGGGAGTGAGTAACGCGTTGTGGTCCCCCGCCCAGCTGAGCGCCCTGACGCCCCAGGTCTTCAACGCCACTCTGGGCTGTGTGACCCCGGCCTTCACCGCCCCCGAGCTGCGCCTACTCAGCCTCTCGCTGGACACACTGGAGCCCCTGGCCGCCTGCAACTGGACACAGGCCCAGAGAGAGGCGATGATGCAGGGCTTTCTGGAGCACAGTGGAACACAGGCGGGGAAGCTGGGAGCTGTGGAGCTGGTGGGACTGGGCCAGTTCGTGTGTGGGATGAGTCCCGAGCAGGTCTCTCTGATCAGCAGCACCTCCTACAGGACGGCTGTGCCACTCATCCCCCCCGCCAGGCTGGCAGCACTCTCGGCCAACCAGCTGCGTGCCCTGGGGCCTACCAATGCTGGCATGGTGACAGAGGCTCAGATGCTAGCCCTGGGGGAGGAGCAGCAGAGGGCGCTGGCGGAGGCGGTGGGGGTGCAGTTCACCCGGGCCGCGACTCTCCccaccaccactaccaccacccGCCCTGTCACTACCGCTACCCCCCTGGCACTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171278 lncRNA upstream 63982 16957458 ~ 16978213 (+) True G136295
TU171280 lncRNA upstream 84900 16956689 ~ 16957295 (+) True G136297
TU171268 lncRNA upstream 127500 16912235 ~ 16914695 (+) True G136286
TU171211 lncRNA upstream 135090 16842567 ~ 16907105 (+) True G136237
TU171209 lncRNA upstream 210393 16829050 ~ 16831802 (+) True G136236
TU171337 lncRNA downstream 76109 17127155 ~ 17209359 (+) False G136341
TU171352 lncRNA downstream 113930 17164976 ~ 17172106 (+) True G136351
TU171462 lncRNA downstream 239099 17290145 ~ 17290529 (+) True G136436
TU171471 lncRNA downstream 249481 17300527 ~ 17304999 (+) True G136444
TU171485 lncRNA downstream 279748 17330794 ~ 17332570 (+) True G136457
AMCG00012367 mRNA upstream 13107 17022659 ~ 17029088 (+) True AMCG00012367
AMCG00012369 mRNA upstream 45131 16993479 ~ 16997064 (+) True AMCG00012369
AMCG00012366 mRNA upstream 57201 16977572 ~ 16984994 (+) True AMCG00012366
AMCG00012360 mRNA upstream 141760 16877377 ~ 16900435 (+) True AMCG00012360
AMCG00012354 mRNA upstream 223756 16812785 ~ 16818439 (+) True AMCG00012354
AMCG00012368 mRNA downstream 5484 17056530 ~ 17063053 (+) True AMCG00012368
AMCG00012374 mRNA downstream 76766 17127812 ~ 17129154 (+) False AMCG00012374
AMCG00012375 mRNA downstream 81516 17132562 ~ 17133006 (+) True AMCG00012375
AMCG00012376 mRNA downstream 108399 17159445 ~ 17168083 (+) True AMCG00012376
AMCG00012380 mRNA downstream 134184 17185230 ~ 17193976 (+) True AMCG00012380
TU171279 other upstream 42106 16963330 ~ 17000089 (+) True G136296
TU171236 other upstream 166595 16871838 ~ 16875600 (+) True G136258
TU171233 other upstream 174747 16866537 ~ 16867448 (+) True G136255
TU171221 other upstream 178602 16811706 ~ 16863593 (+) True G136245
TU171182 other upstream 344804 16674279 ~ 16697391 (+) False AMCG00012349
TU171327 other downstream 74967 17126013 ~ 17129339 (+) True AMCG00012374
TU171339 other downstream 78728 17129774 ~ 17214883 (+) False G136341
TU171331 other downstream 78934 17129980 ~ 17134830 (+) True G136341
TU171333 other downstream 180330 17231376 ~ 17234949 (+) False G136341
TU171338 other downstream 180330 17231376 ~ 17264404 (+) False G136341

Expression Profile