RNA id: AMCG00012371


Basic Information

Item Value
RNA id AMCG00012371
length 2818
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00012371
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 16985862 ~ 16990109 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGAAAGGGCTGCGGTGTGTCCAGTGCGGCACCCGGCGAGAGAGTCTCCTTTTCAGCGGCCCTGACTTCCAGAAGTACGCAGACCGAGGCGCCCAGTCCGCGCCCGCCGACGAGGAGGTCATCGCAGGCGCCGTGAGGGCGGCCGTGGAGGCGGTGGTGCGGCTCGTCTGCGGCGTGAAGGACGCCAGGCTCCGGGACTGTCAGGCCAGGGCGGccgagagggacagggaggCCGAGCGGCTGCGGGTCCAGCTGGAGACGGCGGAGCGGGAGCTCGGAGACCTGCGGCAGCACGTCGGGAATGTCTCTGGCCTGTGTCTGCACGTGAAGGTGGGCCACATTGCCAGGATGTGTGTGAGTGGCACTGGAGAACTGAAGGACGCTGctactttttgtgttttagatCCTGGTGAGGGGCCAGCTGTCGGGGACATCAAGGTAGAAGCGGTTAGCGCTTCGCCGACCCCAGAGCCGACCAGCGAGGAATCCCACCATCTGCGGCCTGATGGGGATGCCGTCAGTGACCCCAGGCTGGTGCCCTGTGCCGGACATGAAGGTGGCCTGGACACATTGCCCACCCTGGAGCAGCGCTGTGAGCCGGAGGAGACCCAAGTGAAAAAGGAACCTCCTGACGAGGCTTGGGTGACGTGGGAGGCGTCTGAGAGCAACGCGTGCGCCAGCGAGCCGGAGAACAAGCCATGCGGTGGGGCAGTGGAGCCGGTCAAGGCTGGAGACCCCCAGTCTGCCCCTCCCAAGCATTCCAGAAACTCCCGCTGGAGACGTGCCTCTAAAGCGTCTCTGAAGCAAGACCCGGGCATCCAAAAAGAGTCCCAGCAAAGCAGAGAGCCGGGGCCCTCCGGGGCCCTTGAGCAAAGACTGAGGATTGTCCGGCTGGCGGCGGCCGAGAGGCAGAGACGCTACCGAGAGAAGCTCCGCGCCGACCCCGAGCGAGCCCACgccctgagagagaaagagctcCGGAGATACCATGAGAGGAAGAAGCTGATCGGAGAGCTGCCGGAGACCACACAGAGGCAACGACGGGAGGCATGGCGGGCGGCAGCCAATCGctacagacagaaaaagaagCTCCTGCCCTCTGATGCCTCAGGAACTCTCTGCCCAGGTGTTTGATGTTAGGGTCTGAGGAGAGCAGGCCTGGCGCGTGCGGAGAGGACGGCCGTATCGCCTTAAACAAACCCGCTGCACCAAATAGACAATAGTATTGGAGCTTTCTAGAGCCAAAATACAAACCAATGCATATGTTGGAACAGAAATATCATCGATTTATTGCATTACAGGAAGTTGCGAATTTGTCGTgctataattaaatacaatacacacgtttttaaacaaaacaagcttatttttgtgttctgtaCCTGCTGAGTTGCTTTTCAGGATCATAGTATTTTAATGCcgcaattaaatgtaatatgaatgCTTTACATTGCTTAAAGCAGAGTGATGTTACCAAGAAATTTCGGCACTCCCACGAAACCACCAATTTTTTTATTAGGGCATCTGTACTTCGTGTTTTAGACAAGCAGCGCTTAATTGCCAGCATGGGTTTTGAAATTGGGCCCGTCCTATTAACAGGGAATTCCCATTTTTGACTGTCGGCTTAAGAGGTTAAGTAAAATCATAAGTCTTGATTGACCAGCATACCttatgtggaaaaataattcaattcattcattcagtcacTAACATGGTGCTgctttacacaatttaaagcattcgtattacaattaattgtggcattaaaatactaTGATGCTGAAAAGCAATTCATCTgggataaaacacaaaaaataagctTATATTGTTTAACAAcatgtgttttgcatttcatgGAAGCACGACAAATTCACCACATCCTTTAAAGCATTACGCAGatcatttttctatttcaacacatgtattggtttgtattttggCCCTAGAAAGCTTCCGTACAGATCGGGCAGTTGGTTAGAGCGAGGAGTCGAAGTCGAAGAATTCTTCCCCCTGCTCGCGGCTTCCAAGAACTAGAGTGTGTTGTGCTCAAGGCAACCCGGCAGACCAAAGGGATTATAATTACGATATTGGCCTGCAGAGTCTCGGAGCAGATGACGAGAAGAGAAGCACAGACGCTCGGGACACAAACTGAACCCAGACCCCGTGCTCGGGTTGTGCAGCAGCCTGTGAGCCTCCACAGCCTCGACCGCTTGTGCTGCCCCCCCTGGTGGACAGAAACATCGTGCCAGCGGTGGGAACCCAGCGCGTGTAaagtgtgtaaataaatgtgtaaaaaccAGGACACTACTGGCTACTGTACAGTTTTcctcaaataataaaatccattAATAAGAGCTTTGAGAATCCTATATTCGTTTCAGACTTGTATGAAGCCCATGTTTCCCTGGTTTAAGATCTCGGGTTGCAGGGTGTCCTATATCAGCCCTGATCTGTTATCGATATCTTTGGCTCACTGGCTGAAAACAatccagatttgtttttcttatggaTATCCAGTTAAGGACAATAAAATGTGGTAATGGTGGTTTGTCTGATGTGAAATTTCCCCTATGCATGGGTCACTTTCTTCTGGCTACTGTCTTTAGCCATCTATGCAGTGTatagaaataatgttatttaataaatgATCAACACCTTGTTGCCatgcattcattttccctttagTAGTCATTCTAATCTGTAATTGTCTCCACTTTGGATCAAAATAATGTTGCGGTAAGAATTACTTTGATCAACTGTGCACTCTGGGCACGGGTGAATAAATGTTGAAAGTGTGCAGTCTtctgttattgtg

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171292 lncRNA downstream 29503 16956142 ~ 16956359 (-) True G136307
TU171274 lncRNA downstream 71177 16912235 ~ 16914685 (-) True AMCG00012365
TU171191 lncRNA downstream 274229 16709574 ~ 16711633 (-) True G136226
TU171190 lncRNA downstream 281049 16704588 ~ 16704813 (-) True G136225
TU171189 lncRNA downstream 285658 16699989 ~ 16700204 (-) True G136224
TU171379 lncRNA upstream 49228 17039337 ~ 17039966 (-) True G136372
TU171383 lncRNA upstream 66503 17056612 ~ 17057001 (-) True G136376
TU171385 lncRNA upstream 74447 17064556 ~ 17098725 (-) True AMCG00012372
TU171391 lncRNA upstream 102434 17092543 ~ 17093357 (-) True G136382
TU171392 lncRNA upstream 112294 17102403 ~ 17103055 (-) False G136383
AMCG00012364 mRNA downstream 19991 16960383 ~ 16965871 (-) True AMCG00012364
AMCG00012361 mRNA downstream 34031 16945305 ~ 16951831 (-) True AMCG00012361
AMCG00012362 mRNA downstream 61878 16922806 ~ 16923984 (-) True AMCG00012362
AMCG00012363 mRNA downstream 69166 16915521 ~ 16916696 (-) True AMCG00012363
AMCG00012365 mRNA downstream 71969 16911492 ~ 16913893 (-) False AMCG00012365
AMCG00012372 mRNA upstream 75228 17065337 ~ 17079207 (-) False AMCG00012372
AMCG00012373 mRNA upstream 90798 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012385 mRNA upstream 218706 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012384 mRNA upstream 255981 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012383 mRNA upstream 274654 17264763 ~ 17267311 (-) True AMCG00012383
TU171188 other downstream 286071 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 286752 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 553049 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 561962 16418192 ~ 16423900 (-) False AMCG00012340
TU171073 other downstream 671469 16312721 ~ 16314393 (-) True G136125
TU171387 other upstream 103390 17093499 ~ 17133907 (-) True G136378
TU171432 other upstream 211665 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 218669 17208778 ~ 17211050 (-) False AMCG00012385
TU171433 other upstream 223735 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 243819 17233928 ~ 17242827 (-) True G136408

Expression Profile