RNA id: AMCG00012372


Basic Information

Item Value
RNA id AMCG00012372
length 1156
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00012372
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17064556 ~ 17098725 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCCTTCTGCGACCCACGGAGATCCGAGCAGCGAGCGAGCCGGCGACTGGATCAGACCCGGATCGGTAGCGAGGTTGTCGGGAGAGCCGGCGGGGGGGCCTTGTGTAGAGATCGGCGCGACCTGGACTTACTTTGGGCTGTTTTTGTTCGGGCGGGACCTATTGCACCACAGTAGTGATTTAAATACGGTTATTTCAGGGCTAGTTTTTCATATCTGTCTTCACCCCCCCCTACAAGAGCGGCTGATCCACGCGAGAGACACTTTAACCCCCCCTCCCATTACGCGGCTTCACCGAGAGACCCCCACACatctccctccccaccccacacacacacgcagacatgGCCGGGGTGAACAGCATCGAGGCCGTGAAGCGCAAGATCAAAGTTTTGCAGCAGCAGGCGGACGAGGCGGAGGAGCGGGCCGAGGGGCTGCAGCggcaggtggaggaggagaagcgAGCCCGGGAGCAGGCGGAGGCCGAGGTGGCGTCTCTGAACCGCCGCATCCAGCTAGTAGAGGAGGAGCTGGACCGGGCCCAGGAGCGGCTGGCCACAGCGCTGCAGAAGCTGGAGGAGGCTGAGAAGGCAGCGGACGAGAGCGAGAGAGGAATGAAGGTGATTGAGAACAGAGCCCTGAAGGACGAGGAGAAGATGGAGCTACAGGAAATCCAGCTGAAGGAGGCCAAACACATCGCCGAGGAGGCCGACCGCAAGTACGAGGAGgtgGCTCGTAAGCTGGTGATCATTGAGGGAGACCTCGAGCGCACAGAGGAGAGAGCTGAGCTTGCAGAATCCAAGGCCAGGGCCCTGGAGGAGCAGCTGCGAGGCTTCGACCAATCTCTGAAGTCGCTGCAGGTGTCCGAAGAAAAGtATTCCCAGAAGGAAGACAAGTATGAGGAAGAGATCAAGATCCTGACCGACAAGCTCAAGGAGGCTGAGACCAGAGCCGAGTTTGCGGAGAGGTCAGTGGCCAAGCTGGAGAAGTCCATCGATGATTTGGAAGCTTCTAGGTCTGCGCCGCTCCCCGTGGGGGGAACCGCCTGGCTGTGGCAACACcactccttcctcctcctctcctcctcctcctcctcctcctggtCTCTCAccttccctccccctccctgtcCAACCTCCCTCTCCAGCCTGCATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171383 lncRNA downstream 8336 17056612 ~ 17057001 (-) True G136376
TU171379 lncRNA downstream 25371 17039337 ~ 17039966 (-) True G136372
TU171292 lncRNA downstream 108978 16956142 ~ 16956359 (-) True G136307
TU171274 lncRNA downstream 150652 16912235 ~ 16914685 (-) True AMCG00012365
TU171191 lncRNA downstream 353704 16709574 ~ 16711633 (-) True G136226
TU171391 lncRNA upstream 13336 17092543 ~ 17093357 (-) True G136382
TU171392 lncRNA upstream 23196 17102403 ~ 17103055 (-) False G136383
TU171394 lncRNA upstream 23196 17102403 ~ 17104457 (-) True G136383
TU171407 lncRNA upstream 46999 17126206 ~ 17129299 (-) True G136392
TU171386 lncRNA upstream 53030 17132237 ~ 17133907 (-) False G136378
AMCG00012371 mRNA downstream 75228 16985862 ~ 16990109 (-) True AMCG00012371
AMCG00012364 mRNA downstream 99466 16960383 ~ 16965871 (-) True AMCG00012364
AMCG00012361 mRNA downstream 113506 16945305 ~ 16951831 (-) True AMCG00012361
AMCG00012362 mRNA downstream 141353 16922806 ~ 16923984 (-) True AMCG00012362
AMCG00012363 mRNA downstream 148641 16915521 ~ 16916696 (-) True AMCG00012363
AMCG00012373 mRNA upstream 1700 17080907 ~ 17082207 (-) True AMCG00012373
AMCG00012385 mRNA upstream 129608 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012384 mRNA upstream 166883 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012383 mRNA upstream 185556 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012390 mRNA upstream 265147 17344354 ~ 17364449 (-) True AMCG00012390
TU171188 other downstream 365546 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 366227 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 632524 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 641437 16418192 ~ 16423900 (-) False AMCG00012340
TU171073 other downstream 750944 16312721 ~ 16314393 (-) True G136125
TU171387 other upstream 14292 17093499 ~ 17133907 (-) True G136378
TU171432 other upstream 122567 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 129571 17208778 ~ 17211050 (-) False AMCG00012385
TU171433 other upstream 134637 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 154721 17233928 ~ 17242827 (-) True G136408

Expression Profile