RNA id: TU171385


Basic Information

Item Value
RNA id TU171385
length 1551
lncRNA type read_through
GC content 0.52
exon number 3
gene id AMCG00012372
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17064556 ~ 17098725 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCTGTATCTGGCAGGCCTGCAGCTTGGCCACCTCCTGCTGGCCGTTGGCGATACTGCTCTGCTGGCTGGCCCTCAGCTCTTCGGCCATGGCCTTAGCGCCGAGCTCCTTGGCCTGGGTGTCCTGGATCCTCTGCTTGTTCTGCGCGATCTCGTCCTCGGCCGTGATCATCCTCTCGTCCAGCTCGTCCGCGCGGCTGCGCCTCTCCCGGAGCTCCAGCTCCTGTGAGTAGAGCAGGAAGACCAGCCACATGGAGATGCCCACCACCCCGAGCAGCAGCACGCCCTGGGCCCTCATGGCCagggggaagagggagaggaggaggaggaggaagacggGACTAGAGAGGGCAAGGGACGGTTGGTGGTGAGCAGGCTGTCTTTGTCAGTTTCTCttgctctttctctcactctcgtctctcagtgtctctcgcAAGTGTCTCAGCCTCtcccctctgtccctctgctctctctctctctcacctgctaTTGACGGTCTCCTCCCCTGTCCTCCTCTCTTCATCTATCTGTTCCTCTCTCGCTGTTGCATTCACCtaccttctctccctctctctctctctctctctgcccttctctgtttctctctctccaagtTCTTGGGCTTGAGGAAGAGACCGGGAGCTTGAAGTTCCTGTGTGACAGGGAAAGAGAgcgggagggaggggagaggaggaggaACCGCCTGGCTGTGGCAACACcactccttccctccccctccctgtcCAACCTCCCTCTCCAGCCTGCATTAAACCCGCcccctctttctcctctctgtctctcgcccTGTTTTCGTTCTTTACTCTTccccttcttcctcctcctcttcccccgATCCCCCATCTCTTGTCTCTGAGGGGAAGACTGGGGGGTGGTTCTCTCCATCTTCCCTGTACTCCTCTGTTGTGTGTCCATCTCAGACACTGCTACAGTGAGGGTGCCAAATTTTTTTCTGCTAGCTagtgagtgttttttttgtgtgccacaatttatatttttggtgGAGAATGACTGATGGGTCTCTTCTCTGGACATTACAGGGGATCATGTTTCTTACAATTTTTGTAACTGGaatgggtgggggtggggtttgagaggaggaaggggagaaaagTGACCTCCATGtttcttcaaatgtaaaaatcactCCTAGCCAATCACGATCTCTGATCATTCTTGATAACTGCCAATCCTTGTGCAAGGATGACTCGGGGGGAGGAGCCAATTGAATTCTATCAAACTGCCAaaagaggtcagaggtcatctTATTGCAAGAGATGAAGGGAAAGAGGGATTGGGGTGTTGGGGGCGGTGAAAAAAACCCCATTAAAGTCTTAACAATTTAGCCCGAGAAACGTatccaaaattaaatcaaatctgaaaataaactgcaataatgttttaaactgcGAAACAGGCACACGTTGGAAGGTGTTCACTTTTTGTAACGGTCGTTTGCTTCTTTGTAATAATTATGATGGAAACCATGAATGATTTGAATAAAGAAACAATCTTATTGACATTCCAAACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171383 lncRNA downstream 7555 17056612 ~ 17057001 (-) True G136376
TU171379 lncRNA downstream 24590 17039337 ~ 17039966 (-) True G136372
TU171292 lncRNA downstream 108197 16956142 ~ 16956359 (-) True G136307
TU171274 lncRNA downstream 149871 16912235 ~ 16914685 (-) True AMCG00012365
TU171191 lncRNA downstream 352923 16709574 ~ 16711633 (-) True G136226
TU171392 lncRNA upstream 3678 17102403 ~ 17103055 (-) False G136383
TU171394 lncRNA upstream 3678 17102403 ~ 17104457 (-) True G136383
TU171407 lncRNA upstream 27481 17126206 ~ 17129299 (-) True G136392
TU171386 lncRNA upstream 33512 17132237 ~ 17133907 (-) False G136378
TU171402 lncRNA upstream 46697 17145422 ~ 17148086 (-) True G136391
AMCG00012371 mRNA downstream 74447 16985862 ~ 16990109 (-) True AMCG00012371
AMCG00012364 mRNA downstream 98685 16960383 ~ 16965871 (-) True AMCG00012364
AMCG00012361 mRNA downstream 112725 16945305 ~ 16951831 (-) True AMCG00012361
AMCG00012362 mRNA downstream 140572 16922806 ~ 16923984 (-) True AMCG00012362
AMCG00012363 mRNA downstream 147860 16915521 ~ 16916696 (-) True AMCG00012363
AMCG00012385 mRNA upstream 110090 17208815 ~ 17217639 (-) True AMCG00012385
AMCG00012384 mRNA upstream 147365 17246090 ~ 17254514 (-) True AMCG00012384
AMCG00012383 mRNA upstream 166038 17264763 ~ 17267311 (-) True AMCG00012383
AMCG00012390 mRNA upstream 245629 17344354 ~ 17364449 (-) True AMCG00012390
AMCG00012391 mRNA upstream 281931 17380656 ~ 17380934 (-) False AMCG00012391
TU171188 other downstream 364765 16699475 ~ 16699791 (-) True G136223
TU171187 other downstream 365446 16698642 ~ 16699110 (-) True G136222
TU171094 other downstream 631743 16431352 ~ 16432813 (-) False AMCG00012340
TU171089 other downstream 640656 16418192 ~ 16423900 (-) False AMCG00012340
TU171073 other downstream 750163 16312721 ~ 16314393 (-) True G136125
TU171432 other upstream 103049 17201774 ~ 17203233 (-) True G136412
TU171434 other upstream 110053 17208778 ~ 17211050 (-) False AMCG00012385
TU171433 other upstream 115119 17213844 ~ 17214963 (-) False AMCG00012385
TU171426 other upstream 135203 17233928 ~ 17242827 (-) True G136408
TU171572 other upstream 281455 17380180 ~ 17381595 (-) True AMCG00012391

Expression Profile